Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01765 atgggcggccttggcaagacaactattgccaaagccttgttttctcaaatgtttccgcaatatgatgctgtttgcttcttagcaaatgttagagaggaatcagaaaggtttggactaaactctttacgtggtgtgcttctttctaagctactccaggttgaacataaatatgatcctgaagaatccacaatgaagaggctcagcaataaaaaagttttgattgtgctcgatgatgtggatagtttagatcaattagatgtgttgtgtagacaacaatgtaaatatgcaggtccaaatagtaaactaattataacaacaagagataggcatttgcttagagggatagttgatgagaatgagatatatgatgtcaagccatgggggtctgccaaatctctagagcttttttgtttacatgccttcaagcaaagacttcctaaaaagggatacgagaaactctctgaaagggcggtggaatatgcagggggagtcccattagctttagaagttttgggttctaatctttgttgcagaagtacagaattctgggtcagtgaattgagaaaactcgataaatgtctgaatctcagaattcaaaatgtgctacaagtgagctatgatggattggacaatctagagaagaatatatttctagacattgcattctttttcaaaggtgaagataaagatgatgtcataagaatactagatgcctgtggtttctgcgctactagtggagtacaggtcctagaggataaagctcttataactatttcatattctgggacgatacaaatgcatgacttgatacaagaaatgggtttgtatatagttcgtggaggttgtaaagatcccaataaacgtactcgattgagagatatagaagaagtttctgatgtacttgaaaataataaggggagtgatgtagttgaagggatacaattagatttgtcacagattgagaatgtacgctggaaggctgacacattcaacatgatgactaatttaagatttcttaaattatacgttccttcaggtaagaaatcaggaaacgtgcaccattgtggcgtatttagtaaattgtctgctaaattgaggtaccttgagtggaatggatgctttttgaagtctcttccagtaaccttttgtgctaagatgcttgttgagatttgcatgccacacagccatgttacagaactttggcagggggtgcaggatgttgcaaatttagtgcgaattgacttaagtgaatgcaagcacttgaagaacctcccagatttgtctaaggcgtcaaggcttaaatgggtcaatcttttcggttgtgaaagtttgtgtgatattcatccatcTGTTTTCTCTTTTGACACGCTTGAAACTTTGATACTGGATGGCTGCAAAAAGCTCAAGAGTCTTAAAAGTGAGAAACATTTAACATCTTTGGAGAATATTAGTGTCAATCTTTGCACAAGTCTCAAGGAATTCTCGGTGTCATCAGATTCAATCACAAGTTTGGATTTAAGCAGCACAGGTATTGAAATGTTGGACTCTCCTTCATTTCGGCGTCTTAGAAATCTCAAGGCACTCAGTGTATATCGTTTGAGACGTGCTCCTGTTGATTTATTTTACCTAAAAGATCTTGCGGAGCTTAGAATTTTTAATTGTAGACTGGCAATTAGCAAGCATTTGCTGCATTCATTATTTGGTCGCTCAAAATCTCTACAAGTACTACACTTGAAGTATTGTTGTAACTTGTTTGAGCTCCCTAACAACATCAGTGGCTTATACAAATTACATGAGTTAAGACTAGATGGTAGCAATGTGAAGACATTGCCAGCTAGCATCAAGGATCTATTTAGTCTAAGAATTCTGTCCGTAGAAAATTGTAGGAAGCTTGGGAGTCTAACAGAGCTTCCACCATTTGTCACAGAGTTGAATGCCATGAACTGCAGGTCATTGAGGACAGTATCCACCTTAAGGGAATCTTACGGAATTTTCGGGGTGAAGAGCAGATTCATTTTATTCAAGAATTGTGTTGCATTGGATGAACCTTCACTCCATTACATTATGGAGGCTGCTCACTCAGAAACCAAGTTTGCGGCAAGTGAAATTAATTATAAATTTGTGAAAGTTTGTTTCCCAGGTAGCAGAGTCCCAGGGCATTTCGAATATCGAACAACAGACTCCTCAATCACTATTGATCTTCCTCCTTCCCGACCTGACTTTGTGGGATTATGTTTGTGTGTGGTTCTTTCCCACTCCTGGGGAATGAAGAACCTTGGTGCTAAAATATGGTGTCAGTGCTACGTGGCAAATGGTAGGAGGTTGGGACCCGCGACCACCTGGTATGATGAAGTTGTCACTGGGTTGAATTCTGATCATGTTTTTATATGGTATGACCGAAACCATTCTGACAGAATCCTCGAAATTTATGACACTGGTGAAAGACGTGTTTCCTTTGAGTTTTTTGTTACAAATGCTATTGGGCAACGTTTGACCATCGGTACCCTAGAGTGTGGCGTCTTTCTAATATTTGGCCAGAAAAATCATCTCTACCATACACTGGTGAATGAATTTTTTGTCTCGCTAATGGCTAAGCACGCTGGATTAATTTTTAAGAGTTTTATTAGGCTTGATAAGAACGATTGCATTGACATAAATAATCAGGAGCGGGATTTGACTGAAGATGGTTCTTGTTCGTGTGACTGTTTATTCGATGTCTTAAGGTATTTACGGAGACTGATCAGCATTTAG 2751 0.2028 MGGLGKTTIAKALFSQMFPQYDAVCFLANVREESERFGLNSLRGVLLSKLLQVEHKYDPEESTMKRLSNKKVLIVLDDVDSLDQLDVLCRQQCKYAGPNSKLIITTRDRHLLRGIVDENEIYDVKPWGSAKSLELFCLHAFKQRLPKKGYEKLSERAVEYAGGVPLALEVLGSNLCCRSTEFWVSELRKLDKCLNLRIQNVLQVSYDGLDNLEKNIFLDIAFFFKGEDKDDVIRILDACGFCATSGVQVLEDKALITISYSGTIQMHDLIQEMGLYIVRGGCKDPNKRTRLRDIEEVSDVLENNKGSDVVEGIQLDLSQIENVRWKADTFNMMTNLRFLKLYVPSGKKSGNVHHCGVFSKLSAKLRYLEWNGCFLKSLPVTFCAKMLVEICMPHSHVTELWQGVQDVANLVRIDLSECKHLKNLPDLSKASRLKWVNLFGCESLCDIHPSVFSFDTLETLILDGCKKLKSLKSEKHLTSLENISVNLCTSLKEFSVSSDSITSLDLSSTGIEMLDSPSFRRLRNLKALSVYRLRRAPVDLFYLKDLAELRIFNCRLAISKHLLHSLFGRSKSLQVLHLKYCCNLFELPNNISGLYKLHELRLDGSNVKTLPASIKDLFSLRILSVENCRKLGSLTELPPFVTELNAMNCRSLRTVSTLRESYGIFGVKSRFILFKNCVALDEPSLHYIMEAAHSETKFAASEINYKFVKVCFPGSRVPGHFEYRTTDSSITIDLPPSRPDFVGLCLCVVLSHSWGMKNLGAKIWCQCYVANGRRLGPATTWYDEVVTGLNSDHVFIWYDRNHSDRILEIYDTGERRVSFEFFVTNAIGQRLTIGTLECGVFLIFGQKNHLYHTLVNEFFVSLMAKHAGLIFKSFIRLDKNDCIDINNQERDLTEDGSCSCDCLFDVLRYLRRLISI 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01765 916 PANTHER NB-ARC DOMAIN PROTEIN 1 703 - -
Cca02g01765 916 Gene3D Ribonuclease Inhibitor 283 500 IPR032675 -
Cca02g01765 916 Gene3D Ribonuclease Inhibitor 501 662 IPR032675 -
Cca02g01765 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 220 IPR027417 -
Cca02g01765 916 Gene3D - 1 122 IPR027417 -
Cca02g01765 916 Pfam C-JID domain 712 843 IPR045344 -
Cca02g01765 916 Pfam NB-ARC domain 1 199 IPR002182 GO:0043531
Cca02g01765 916 Gene3D - 128 210 IPR042197 -
Cca02g01765 916 SUPERFAMILY L domain-like 265 654 - -
Cca02g01765 916 PRINTS Disease resistance protein signature 405 421 - -
Cca02g01765 916 PRINTS Disease resistance protein signature 66 80 - -
Cca02g01765 916 PRINTS Disease resistance protein signature 161 175 - -
Cca02g01765 916 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 703 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01765 Cca-Chr2 36829004 36833540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01765 1 843 WRKY Transcription Factor Family AT5G45050 27.925 1.90e-71 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01765 - - ccaj:109795381 1447.57