Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01762 ATGGCGAAACAAAACATGTCAGCATGGACATGGAGTCCTAAGAAGtacgacgttttcatcagcttcagaggtgaggacgtccgctccaacttcattagccatcttcgttctgctctcgatcgagccaacatcaaagcatacgccgatgacgctaaccttcataaaggagacgaggtttggccctcactgtcccaagcaattcacgactcacacctcgccatcgtcgttttctccgaaacctacgctgattccaagtggtgcttgaaagaactggtggaaatacttcactgcagaataattcagggactcgtagccatacctgtgttctacgaagtggatccatcccacataaggaattacagtggcccttacggagaagcaattgcaaaacatgagacatattttggtgacacagacaaccaaatcctccaagactggaaagctgctctcactgaagctgccaatatatctggatgggactctcgtagccgtgactacaagaatgaatctcaagtaatagagaaaattgtgaaagatgtatcccacaagttgagcctaaggttccctgttgaactaaaagtacaagaccttgttgaaattgaaaagcactgtgaagaagtcaaattgttgctgtcagaagatcaaaaacatcagttacaacaaaatgttcaagtaattggaatttggggcatgggcgggattggaaagacaactattgccaaagccttgttttctcaactctttccgcaatatgatgctgtctgcttcttagcaaatgttagagaggaagcaaaaaggcttggactaacctctttatgtgataagcttctttctgagctgctcaaggatgaacatcataaagataatcctgcaggatccacattcattctgaggaggctcagcaataaaagagttttgattgtactcgatgatatggatagtttagatcaagtagatattttgtttagagaacaatgtaactttgtaggcccagatagtaaagttattataacaacaagaaataggcatttgcttaccggaagagttgataagatatacgaggttgggatatggaactttgtcgaatctctagaacttttttgcttacatgccttcaaggaaagacatcctaataagggatatgaagatctctcagaaagggccgtgaaatatgcagggggagttccattagctttaaaagttttgggttctaatcttcattgtagaagtacagaattttgggaatgtgaattgagtaaactcatgaattgtcccaatgacagaattcaaaatgtattacaagtgagctatgatgaattagacaacctagagaagaaaatatttctggacattgcattctttttcaaaggtgaagacaaagattatgtcgtaagaatactagatgcctgtggcttctatgctaccagtggagtaaaggtccttgaagacaaagctcttataactatttcatattctgggacgatacaaatgcatgacttgatacaggaaatgggcttgaacatagttcgtgggggcattgaagatccaggaaaacgtagtcgattgagagatatagaagaaatttctgatgtacttgaaaataaaaaggggagtaatgtaattgaagggataaaattagatttgtctgagattgaggatttgcacttgaaaactaacacattgaatttgatgactaatttaagaattcttagattatatgtaccttcgggtaagagatcaggaaatgtgcactattctggcgtccttaataatttgtctggtaaattgaggtaccttgagtggaatggatgctttttgaagtcttttccagtaaccttttgtgctaagatgcttgttgaggtttgcatgccacacagccatgttacagaactttggcagggggtgcaggatgttgcaaatttagtgcgaattgacttaagtgaatgcaagcacttgaagaacctcccagatttgtctaaggcgtcaaggcttaaatgggtcaatcttttcggttgtgaaagtttgtgtgatattcatccatctgttttctcttttgacacacttgaaactttgaTACTGGATGGCTGCAAAAAGCTCAAGAGTCTCAAAAGTGAGAAACATTTAACATCTTTGGAGAATATTAGTGTCAATCTTTGCACTAGTCTCATGGAATTCTCCGTGTCATCAGATTCAATCACAAGTTTGGATTTAAGCAGCACAGGTATTGAAATGTTGGACTCTCCTTCATTTCGGCGTCTTAGAAATCTCAAGGCACTCAGTGTATATCGTTTGAGACGGGCTCCTGTTGATTTATTTTTCCTAAAAGATCTTGCGGAGCTTAGAATTTTTAATTGTAGACTGGCAATTAGTAAACATTTGCTGCATTCATTATTTTGTCGCTCAAAATCTCTACAACTACTACACTTGAAGAATTGTTGTAACTTGTTTGAGCTCCCTGACAACATCGGTGGCTTATATGCATTACGTGAGTTAAGACTAGATGGTAGCAATGTGAAGACATTGCCAGCTAGGATCAAGCATCTAGATAATCTAAGCATTCTGGCCTTAGAAAATTGTAGGAAGCTTGGGAGTCTAACAGAGCTTCCACCATTTGTCACAGTGTTGAATGCCATGAACTGCAGGTCATTGAGGACAGTATCCATTTTAACGACACCTTACGCAATTTTAAGGGTGAAGACCAGattcatttcattcatgaattgtgttgcattggatgaaccttcattccattgcattATGGAGGTTGCTCACTCAGAAACCGAGCTTGCGGCACGTGAAATTAATTATAAATTTGTGAAAGTTTGTTTCCCAGGTAGCAGAGTCCCAGGGCATTTCAAATATCGAACAACAGACTCCTCAATCACTATTGATCTTCCTTCTTCCCGATCTGACTTTGTGGGATTATGTTTGTGTGTGGTTCTTTCCCACTCCTGGGGAATGAAGAACCTTGGTGCTAAAATATGGTGTCAGTGCTACGTGGCAAATGGTAGGAGGTTGGGACCCGCGACCACCTGGTATGATGAGGTTGTCACTGGGTTGAATTCTGATCATGTTTTTATATGGTATGACGCAAACCATTTTGACAGCATCGTCGAAATTTATGACACTGGTGAAAGACGTGTTTCCTTTGAGTTTTTTGTTACAAATGCTATTGGGCAACATTTGACCATCGGTACCCGAGAGTGTGGGGTCTTTCTGATACTTGACCAGAAAAATCATTTTTCCGTTCCCCTTAAACTGCGGAATAAGTTGTCTGTCGCGCTATATGTTCAGCGGGCTGCATACGATTTTATTACGCGTGATGAGAACGATTGCATTGACATAAATAATCAGGAGCGGGATTTGACTGAAGATTGTTCTTGTTCGTGTGTCTGTTTATTCGATGTCTTAAGGTATTTACGAAGACTGATCAGCATTTAG 3441 0.1622 MAKQNMSAWTWSPKKYDVFISFRGEDVRSNFISHLRSALDRANIKAYADDANLHKGDEVWPSLSQAIHDSHLAIVVFSETYADSKWCLKELVEILHCRIIQGLVAIPVFYEVDPSHIRNYSGPYGEAIAKHETYFGDTDNQILQDWKAALTEAANISGWDSRSRDYKNESQVIEKIVKDVSHKLSLRFPVELKVQDLVEIEKHCEEVKLLLSEDQKHQLQQNVQVIGIWGMGGIGKTTIAKALFSQLFPQYDAVCFLANVREEAKRLGLTSLCDKLLSELLKDEHHKDNPAGSTFILRRLSNKRVLIVLDDMDSLDQVDILFREQCNFVGPDSKVIITTRNRHLLTGRVDKIYEVGIWNFVESLELFCLHAFKERHPNKGYEDLSERAVKYAGGVPLALKVLGSNLHCRSTEFWECELSKLMNCPNDRIQNVLQVSYDELDNLEKKIFLDIAFFFKGEDKDYVVRILDACGFYATSGVKVLEDKALITISYSGTIQMHDLIQEMGLNIVRGGIEDPGKRSRLRDIEEISDVLENKKGSNVIEGIKLDLSEIEDLHLKTNTLNLMTNLRILRLYVPSGKRSGNVHYSGVLNNLSGKLRYLEWNGCFLKSFPVTFCAKMLVEVCMPHSHVTELWQGVQDVANLVRIDLSECKHLKNLPDLSKASRLKWVNLFGCESLCDIHPSVFSFDTLETLILDGCKKLKSLKSEKHLTSLENISVNLCTSLMEFSVSSDSITSLDLSSTGIEMLDSPSFRRLRNLKALSVYRLRRAPVDLFFLKDLAELRIFNCRLAISKHLLHSLFCRSKSLQLLHLKNCCNLFELPDNIGGLYALRELRLDGSNVKTLPARIKHLDNLSILALENCRKLGSLTELPPFVTVLNAMNCRSLRTVSILTTPYAILRVKTRFISFMNCVALDEPSFHCIMEVAHSETELAAREINYKFVKVCFPGSRVPGHFKYRTTDSSITIDLPSSRSDFVGLCLCVVLSHSWGMKNLGAKIWCQCYVANGRRLGPATTWYDEVVTGLNSDHVFIWYDANHFDSIVEIYDTGERRVSFEFFVTNAIGQHLTIGTRECGVFLILDQKNHFSVPLKLRNKLSVALYVQRAAYDFITRDENDCIDINNQERDLTEDCSCSCVCLFDVLRYLRRLISI 1146
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01762 1146 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
Cca02g01762 1146 Gene3D Ribonuclease Inhibitor 519 729 IPR032675 -
Cca02g01762 1146 Gene3D - 359 441 IPR042197 -
Cca02g01762 1146 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 937 IPR044974 GO:0006952
Cca02g01762 1146 SMART till_3 15 156 IPR000157 GO:0007165
Cca02g01762 1146 Coils Coil 426 446 - -
Cca02g01762 1146 Pfam C-JID domain 943 1073 IPR045344 -
Cca02g01762 1146 Gene3D - 186 352 IPR027417 -
Cca02g01762 1146 SUPERFAMILY L domain-like 496 895 - -
Cca02g01762 1146 Gene3D - 13 185 IPR035897 -
Cca02g01762 1146 Pfam NB-ARC domain 202 440 IPR002182 GO:0043531
Cca02g01762 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 451 IPR027417 -
Cca02g01762 1146 PRINTS Disease resistance protein signature 225 240 - -
Cca02g01762 1146 PRINTS Disease resistance protein signature 299 313 - -
Cca02g01762 1146 PRINTS Disease resistance protein signature 392 406 - -
Cca02g01762 1146 PRINTS Disease resistance protein signature 636 652 - -
Cca02g01762 1146 Pfam TIR domain 15 198 IPR000157 GO:0007165
Cca02g01762 1146 Gene3D Ribonuclease Inhibitor 730 892 IPR032675 -
Cca02g01762 1146 PANTHER NB-ARC DOMAIN PROTEIN 14 937 - -
Cca02g01762 1146 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca02g01762 Cca-Chr2 36761643 36766118 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01762 12 892 WRKY Transcription Factor Family AT4G12020 30.735 1.87e-87 310
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01762 - - ccaj:109795381 2276.52