Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01760 ATGAGAGCTAAGAGTTTGATAAGTAAGAGGCAGATTAGTATAAGATTGAGAAAAATGATAAAGTGTATATGTTCGGGGGAGCAATTAAGGGTAGATGAATTAAATTACTCATCAGAGTCACTAGCAACGAGGGACTATTCAGCAAGTGGTGGTTATAATTCATCTCGACCAGGTGAAATCGACACAAAGGTGGACAATAGCAACATTGAAGAAGCAGAGTCTTCTCTCCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATATAGAAGCTGCTCTCCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTACCAAAATAAAAGTGTCTATATCTAGAAGATGTGAAACCAATAGACGCCGTTCGCAAAGTGATGAAATGCCTCCTATGTCAGTGCATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCAAGCTCTTGGAAGGTTTCAAGATGCTGCTCATTCATGCAAAACTATTTTAGACACGGTTGAATCTGCCTTACCAGAAGGGTGGCCTGAAAACTTTGTTTCAGACTGTAAACTACAAGAGACAGTGGCAAATGCTGTAGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGTTCTTCTCAAGATGTTATCTCATCATTTAGGAGGGCCTTGCTTTATCATTGGAATCTTGACACTGAAGCCAATGCAAGAATACAAAAGGAATTTGCTTTGTTTCTCTTGTACAGTGGTTGTGAAGCAATCCCCCCTGCTCTACGCTCTCAATTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTACTTCTGATTCTGCTGAGAAAATCTGTTCTTGGAAGCATTGTATGGGACCCTTCATTGGTTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTGGCTCAACAGGTTGAGGAATTGCTTCCTGAAAACATGGAGAGAAAAGAAAGATACTATATTCTTGCTCTTTGTTACTGTGGGGAAGGTGAACATTTGACTGCTTTGGATCTCTTGAGGAACTCTTTGCATCATAGAGAGAACTCAGATTGCATAAGAGAGTTACTTCTAGCTTCAAAAATTTGTGCAAACAACAAGGTTTGCATTGAAGATGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTGCATGGAAAGTGCATGCAGATGGTAGCTATTGCGAATTGCTTGTTAGGTGTTCTACTGTCAACAAAATCCAGGCTAGCCGCTTCTGAATCAGAAAAAGTTTTGATGCAGTCTGAAGCACTCAGTGCTCTGAAAAATGCTGAAAGAATGATGAGGGAAAGTGATCCTTTCATTGTCCTTCATCTTTGTCTAGAATATGCCGAGCAGAGGAAGTTAAGCATTGCTTTTGATCATGCAAAGGAACTGATTAAGCTTGAGGGCGGATTTAGTGTTAGTGGATATATTCTACTAGCACGGATTTTGTCAGCTCAAAAGAAGTTTGCAGATGCAGAGCTTGTTATTGATGCTGCTCTGGATCAAAGTGGGAAATGGGATCAAGGAGAATTGTTAAGAACTAAAGCTAAACTACGGATAGCACAGGGAAAATTAAAGAATGCTGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAAAATAAAAGTTTAGGAACTGCAAGTAAGGTTGTGAAGAATAAAGGAAACCATGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACGACCTTGTCACAGTGGCAGGACGCTGAAGTTTGTCTTGCAAAATCTGAGGCTATTAATCCCGATTCTGCTTCTAGATGGCACACAAAAGGTGTACTTTTTGAAGCAAGAGGTCTTCATCAAGAGGCTTTGAAATCATTTAGGAAAGCATTAGATATTGAGCCCAACCATGTGCAAAGTTTGATATCCACAGCCTGTGTGCTCAGACAACTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCACTACGCCTTGACAGAACAAACCCATCTGCTTGGTACAATCTTGGACTCTTCTACAAAACTGATTTGGGGACATCAGCAATGGAAGCCGTTGAATGCTTTGAAGCAGCAGCTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2196 0.403 MRAKSLISKRQISIRLRKMIKCICSGEQLRVDELNYSSESLATRDYSASGGYNSSRPGEIDTKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVITKIKVSISRRCETNRRRSQSDEMPPMSVHAVSLLLEAVFLKAKSLQALGRFQDAAHSCKTILDTVESALPEGWPENFVSDCKLQETVANAVELLPELWKLAGSSQDVISSFRRALLYHWNLDTEANARIQKEFALFLLYSGCEAIPPALRSQLDGSFVPRNNIEEAVLLLLILLRKSVLGSIVWDPSLVDHLSFALSVSGEFMTLAQQVEELLPENMERKERYYILALCYCGEGEHLTALDLLRNSLHHRENSDCIRELLLASKICANNKVCIEDGIKYSCKAISQLHGKCMQMVAIANCLLGVLLSTKSRLAASESEKVLMQSEALSALKNAERMMRESDPFIVLHLCLEYAEQRKLSIAFDHAKELIKLEGGFSVSGYILLARILSAQKKFADAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKVVKNKGNHDRRLEMEIWHDLANVYTTLSQWQDAEVCLAKSEAINPDSASRWHTKGVLFEARGLHQEALKSFRKALDIEPNHVQSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYKTDLGTSAMEAVECFEAAAFLEESSPIEPFR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01760 731 PANTHER OS10G0471400 PROTEIN 11 731 - -
Cca02g01760 731 Gene3D Tetratricopeptide repeat domain 61 584 IPR011990 GO:0005515
Cca02g01760 731 PANTHER PROTEIN NPG1 11 731 IPR043376 -
Cca02g01760 731 Pfam Tetratricopeptide repeat 621 653 IPR019734 GO:0005515
Cca02g01760 731 Gene3D Tetratricopeptide repeat domain 585 727 IPR011990 GO:0005515
Cca02g01760 731 MobiDBLite consensus disorder prediction 47 67 - -
Cca02g01760 731 SUPERFAMILY TPR-like 152 469 IPR011990 GO:0005515
Cca02g01760 731 MobiDBLite consensus disorder prediction 47 62 - -
Cca02g01760 731 SUPERFAMILY TPR-like 532 701 IPR011990 GO:0005515
Cca02g01760 731 SMART tpr_5 337 370 IPR019734 GO:0005515
Cca02g01760 731 SMART tpr_5 620 653 IPR019734 GO:0005515
Cca02g01760 731 SMART tpr_5 494 527 IPR019734 GO:0005515
Cca02g01760 731 SMART tpr_5 586 619 IPR019734 GO:0005515
Cca02g01760 731 SMART tpr_5 152 185 IPR019734 GO:0005515
Cca02g01760 731 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Cca02g01760 731 SUPERFAMILY TPR-like 339 557 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01760 Cca-Chr2 36722828 36727739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01760 10 731 Calmodulin-binding Proteins AT4G28600 53.261 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01760 K21843 - gmx:100789469 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01760 02 36722828 36727739 Cca02g01760 02 36722828 36727739 ECH