Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01734 ATGAGTGGCAATCAAAATGGTTTTAGATGCACATTGTGCAATCGTGTTTTCCCTAGCTTTCAACCACTCATATCCCACATTCAAATCCACTTTGCTGAAGAAAACCATGTGATGAGAAGTCTATATTCGCCAAACCATGTCAACTCTCAAAGAGGAATTATACCCAATCGTTTACAACCTTATTTTCCAAGGCCAATGGTGATGGACCAAACCATAAACTATGTTAACAACAGGGCTTTCCAGCCACCACTGCAACAACGTAGGGTGATGCCTCGACTTAGAGCAAACTCATTTTCCTCTATCCAACATGTGGTTGCTGCTGCACAACCACTTCAAGGTCCACCACAGACTAGGAATAATGCTGCTGAAACAACATTATCTCTTGCTCCACCAATCCACCAAAGGGAGATGGAGGTTTCTCCAGTTGATGGAACGAAGCCATATATCAACCTTTTGGACAAACCCGTCAATAATCCAGCTATCATTAATGCTGACGCATTAGATCTCGCATTAAGGCTTTAA 522 0.4234 MSGNQNGFRCTLCNRVFPSFQPLISHIQIHFAEENHVMRSLYSPNHVNSQRGIIPNRLQPYFPRPMVMDQTINYVNNRAFQPPLQQRRVMPRLRANSFSSIQHVVAAAQPLQGPPQTRNNAAETTLSLAPPIHQREMEVSPVDGTKPYINLLDKPVNNPAIINADALDLALRL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01734 173 SMART c2h2final6 8 30 IPR013087 -
Cca02g01734 173 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Cca02g01734 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Cca02g01734 173 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01734 Cca-Chr2 36483374 36483895 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01734 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01734 - - pvu:PHAVU_007G056300g 156.762