Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca02g01732 | ATGGGGCAAGGGCAATCCAAGGACGAAGTGCTCTACCAGCAAGTCGGTTATGGGAACAGCGAAGGCATCAAAACCCTTCACAGAGAAGGTGCAGGCCTAGAGTGGAGGGACAAAGAAGCAAAGACCCCCTTGATTGTTGCTTGTATGAATCCCCAGCTTTATAATGTTGCTAAAACATTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCTGGTCGTCATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCTTTGACAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTAGTGTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGGCACAGCAATGTTGTTCGCGCAATTGAGAGTCATTTATGCTTGTTCTCTGGCTGGTTGCGGGAGTTTCACGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCTAAAAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGTAATCTTACCAGACCTTACAAGTTGGAGCTTGCCATATATTCTAATTTGCAGCAGGATGCACAACCACGTACAATCATTTCTCTGTGGAAGGCCCATTTACAAGAACCAAAGCTTCACCAGTCTGATCCATCAGTGTCAATTGTTGATCACACTACTAAAACACGCATTAAACTTGGGCCTGCAAGTGAGAGTGACAAGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGCAAGTCCAGCATTCTTGCAAAATAATGTGGCTACAGGTCCACCCACAGCACCACCAGCTGCAGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCGCCCTTTCCTGATGTCCAGTCAAACTTTGAAGCAAGCTCTTCCAGCAATGCAGTGAATACAGGCAATCATAGTTTTCTGGGCACACCAAATCCAGATAAAAGTGATAGTGAGTTGGTACATGATGCTAACCCGGGTTTGGAGTTCAATCCATCGGCACCACCAATCACTGATGAGATTCCAACAGATGGCCCCATTCAATATCCATCAATTGATTCAAGCCCTGTTGATTTAGCATCTCCAGATGTTGAGAAGCTCCCTAAAGAAGAAAATAATGCTAGTGGAAGCGGTTCATGTGTGATATGTCTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGGTCTAAGATAGACCAGATCATAAAGCTATACCATGTTTGA | 1329 | 0.4582 | MGQGQSKDEVLYQQVGYGNSEGIKTLHREGAGLEWRDKEAKTPLIVACMNPQLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFDSIVKLLLLHGANPLVLNDDCLTALEVARAKGHSNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRNLTRPYKLELAIYSNLQQDAQPRTIISLWKAHLQEPKLHQSDPSVSIVDHTTKTRIKLGPASESDKQQLTWFSNACKGIPQASPAFLQNNVATGPPTAPPAAEDTELAMAISASLQSAMQERPPFPDVQSNFEASSSSNAVNTGNHSFLGTPNPDKSDSELVHDANPGLEFNPSAPPITDEIPTDGPIQYPSIDSSPVDLASPDVEKLPKEENNASGSGSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRSKIDQIIKLYHV | 442 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca02g01732 | 442 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
| Cca02g01732 | 442 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
| Cca02g01732 | 442 | Gene3D | - | 79 | 132 | IPR036770 | - | |
| Cca02g01732 | 442 | Pfam | Ankyrin repeats (many copies) | 60 | 116 | IPR002110 | GO:0005515 | |
| Cca02g01732 | 442 | SMART | ring_2 | 391 | 429 | IPR001841 | - | |
| Cca02g01732 | 442 | Gene3D | - | 3 | 78 | IPR036770 | - | |
| Cca02g01732 | 442 | PANTHER | UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED | 1 | 442 | - | - | |
| Cca02g01732 | 442 | SUPERFAMILY | RING/U-box | 390 | 436 | - | - | |
| Cca02g01732 | 442 | PANTHER | ROLLING PEBBLES, ISOFORM B | 1 | 442 | - | - | |
| Cca02g01732 | 442 | Pfam | Zinc finger, C3HC4 type (RING finger) | 389 | 436 | - | - | |
| Cca02g01732 | 442 | SUPERFAMILY | Ankyrin repeat | 9 | 133 | IPR036770 | - | |
| Cca02g01732 | 442 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
| Cca02g01732 | 442 | MobiDBLite | consensus disorder prediction | 286 | 373 | - | - | |
| Cca02g01732 | 442 | ProSiteProfiles | Zinc finger RING-type profile. | 391 | 430 | IPR001841 | - | |
| Cca02g01732 | 442 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 373 | 442 | IPR013083 | - | |
| Cca02g01732 | 442 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
| Cca02g01732 | 442 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Cca02g01732 | 442 | MobiDBLite | consensus disorder prediction | 299 | 324 | - | - | |
| Cca02g01732 | 442 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca02g01732 | 384 | 439 | C3H Transcription Factor Family | AT3G06140 | 35.088 | 1.23e-07 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca02g01732 | - | - | gmx:100805974 | 765.377 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca02g01732 | 02 | 36462472 | 36467490 | Cca02g01732 | 02 | 36462472 | 36467490 | ECH |