Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01731 ATGGTCAGAGCTCCTTGTTGTGAAAAAATGGGCTTGAAGAAGGGCCCTTGGGCCCCCGAGGAAGATCAAATCCTCACTTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCTAAGCAAGCAGGCTTGTTAAGGTGTGGAAAGAGCTGCAGACTGCGATGGATTAACTATCTGAGGCCTGATATCAAGAGAGGGAATTTCACATCAGAAGAAGAAGAAACTATCATTAAGCTGCATGACATGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACCGACAACGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGCTGCAGAAAACAGATCATCCAAATTCACATTCCAAAAGGGTCACTAGGCCAAAAATTAAACGTTCTGATTCCAATTCCAGCATTATAACTCAATCAGAACCTGCCAATCTTAATTTCAGAGAAATGGACACAACATCAGCATGCACTAGTTCTAGTGATTTTTCATCAGTCACAGTTGGTGATAGCAAAAATATCAAGAGTGAAGACATAGAATCTCTTGAGACAATGCCTGTGATTGACGAGAGTTTTTGGTCAGAAGCTGCAATGGATGAAACCCCCACCATGTCATCACAGTCTTTGACAATCTCAAATGACATGCCACTTCAATACCCTTTTAACTATGAGGAAAGTTTCCAACAGAGTCATGCTTATGATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTCACCAGGACCTCGGATTCAATAGAATTGCCTGAGTTCTGA 801 0.4207 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEETIIKLHDMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLQKTDHPNSHSKRVTRPKIKRSDSNSSIITQSEPANLNFREMDTTSACTSSSDFSSVTVGDSKNIKSEDIESLETMPVIDESFWSEAAMDETPTMSSQSLTISNDMPLQYPFNYEESFQQSHAYDSNFDDGMDFWYDIFTRTSDSIELPEF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01731 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Cca02g01731 266 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 257 - -
Cca02g01731 266 CDD SANT 69 112 IPR001005 -
Cca02g01731 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g01731 266 CDD SANT 16 61 IPR001005 -
Cca02g01731 266 SMART sant 66 114 IPR001005 -
Cca02g01731 266 SMART sant 13 63 IPR001005 -
Cca02g01731 266 MobiDBLite consensus disorder prediction 114 151 - -
Cca02g01731 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g01731 266 Gene3D - 68 144 - -
Cca02g01731 266 MobiDBLite consensus disorder prediction 136 151 - -
Cca02g01731 266 Gene3D - 13 66 - -
Cca02g01731 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca02g01731 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g01731 266 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca02g01731 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca02g01731 266 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01731 Cca-Chr2 36439385 36441937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01731 1 266 MYB Transcription Factor Family AT2G31180 49.630 3.67e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01731 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01731 K09422 - gmx:100807569 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01731 02 36439385 36441937 Cca02g01731 02 36439385 36441937 ECH