Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01725 ATGGCAACTATCCTGGGAAAGGAGAGTGGTCTCAACCTCAAGGAGACTGAACTTTGCCTCGGTTTGCCTGGCGGAGGCGGCGTCggcggtggcggtggcggtggcggtggcggtggTAGCTCTGAGGTGGAAACTCCTAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAATCTTCAATCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGATCCTGCCAAGCCACCAGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAGAAGGTTAGCACTGAAGATGTCGCTGAGAAGACAACAAGCAGCACTGCTTCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTCGACCTCACCATGTACAAAAGCTACAAAGACTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTTGCGCcaagagcaatggaaaaatgcaaaagcagaagctga 747 0.4431 MATILGKESGLNLKETELCLGLPGGGGVGGGGGGGGGGGSSEVETPRATGKRGFSETVDLKLNLQSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSTEDVAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01725 248 ProSiteProfiles PB1 domain profile. 130 230 IPR000270 GO:0005515
Cca02g01725 248 MobiDBLite consensus disorder prediction 22 54 - -
Cca02g01725 248 Pfam AUX/IAA family 47 239 IPR033389 -
Cca02g01725 248 Coils Coil 60 80 - -
Cca02g01725 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 241 - -
Cca02g01725 248 Gene3D - 124 242 - -
Cca02g01725 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 241 IPR003311 GO:0005634|GO:0006355
Cca02g01725 248 SUPERFAMILY CAD & PB1 domains 127 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01725 Cca-Chr2 36353367 36356155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01725 115 238 B3 DNA Binding Superfamily AT4G23980 33.065 1.61e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca02g01725 AUX_IAA 3.6e-83 CL0072