Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01724 ATGGAAACCAGTGTGACATATGAGAATGATCTCAACCTCAAGGCAACAGAACTTAGATTGGGTCTGCCAGGAACTGAGGAGGAAAAATCACTGCCTGCAGCTGTTAGAACCAACAAAAGGCCTTTGAATGAACCTTCTTCTGATCAAGACTGTGCTTCAAAGGGATCTGATGCAGCCCCTCCTCCCAAGGCAAAGATAGTGGGGTGGCCACCAATAAGATCTTACAGGAAAAACAGCCTTCAGGAGAATGAAGGTGCAGGTATTTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAAATTGACTTGAGGGTTTATGGAGCCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAATACTCTGAAAAAGAAGGTTACAAGGGATCTGAGTATGCACCTACATATGAAGACAAAGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAGTAA 483 0.441 METSVTYENDLNLKATELRLGLPGTEEEKSLPAAVRTNKRPLNEPSSDQDCASKGSDAAPPPKAKIVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLRVYGAYTQLLKALENMFKLTIGEYSEKEGYKGSEYAPTYEDKDGDWMLVGDVPWE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01724 160 MobiDBLite consensus disorder prediction 23 63 - -
Cca02g01724 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 160 IPR003311 GO:0005634|GO:0006355
Cca02g01724 160 ProSiteProfiles PB1 domain profile. 87 160 IPR000270 GO:0005515
Cca02g01724 160 Pfam AUX/IAA family 47 160 IPR033389 -
Cca02g01724 160 SUPERFAMILY CAD & PB1 domains 77 160 - -
Cca02g01724 160 Gene3D - 81 160 - -
Cca02g01724 160 PANTHER AUXIN-INDUCED PROTEIN 10 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01724 Cca-Chr2 36302190 36303699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01724 90 159 B3 DNA Binding Superfamily AT2G46530 41.429 7.97e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca02g01724 AUX_IAA 3.3e-37 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01724 K14484 - gmx:100527777 257.299