Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01720 ATGGAACCACCATTCAACCAGCAGGCGCCGCCGCGCGCCGCCACTATCCTCGGAAAGTACCAGCTCACGCGCCTCCTCGGCCGCGGCAGCTTCGCCAAGGTCTACCAGGCGCGCTCCCTTGTCGACGGCGCCACCGTCGCCGTCAAAATCATCGACAAATCCAAAACCGTCGACGCCGGGATGGAGCCGCGCATAATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCCGAATCCACGAGGTCATGGCCACCAAGACCAAGATCCACCTCATCGTCGAGCTCGCCGCCGGCGGCGAGCTCTTCTCCAGAATCTCCCGCCGCGGCCGCCTTCCGGAGGCCACCGCGCGCCGCTACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGCCACCGCCACGGCGTGGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGATGGCGACGGCAACCTCAAGGTCTCCGACTTCGGCCTCTCGGCGCTGCCGGAGCAGCTCAAAAACGGCCTCCTCCACACCGCCTGCGGCACGCCGGCTTACGCCGCGCCGGAGATTCTCCGGCGGTGCGGCGGGTACGACGGGTCGAAGGCCGACGCGTGGTCCTGCGGCCTGATCCTCTACGTCCTCCTGGCCGGGTACCTCCCGTTCGACGACTCCAACATTCCGGCGATGTGCAAGAAAATTTGCCGGCGGGATTACCAGTTCCCGGAGTGGATGACGAAACCGGCCCGTTTTATTATCTATAAGTTACTGGACCCGAACCCGGGCACGCGAATGGGCCTGGAGGCCCTGTTTTGTAATGCGTGGTTTAAGAAATCACTTAAAGCGGAAACCGCGGAGGAAAACGCGTTGGACTGGGAGAATACTAATACTAAAAATAACGTTTATGATAAGGGTTCGGGTTTGACCGCGTTTGACATTATATCCATGTCTTCGGGTTTGGACTTGAGGAGTTTATTCGAAACGACGTCGTGTAGAAGAGAGAAGAGGTTCAGTTCGAGTGCGAGAGTGGAGGTGGTGGAGGAGAAGGTAAAGGAAGTGGGTGGGGTTTTGGGGTTTAAGGTTGTTGAGGTTGGGAAGAGTAACAGTGCTGGTATTGCTTTGGTGAAAGGGAAAGTGGTTTTGGTGTTTGAGGTGCTTGAGATTGTGGCGAACGAGCTTCTTTGGGTGGCTGTGAAGGTTGTGGAGGGTGGCTTGGAGTTTGAGGAACATCATTGGGAGGATTGGAAATCCGCGTTGCAAGATCTCGTCCTTTCTTGGCACCACGAATCGTGA 1293 0.5878 MEPPFNQQAPPRAATILGKYQLTRLLGRGSFAKVYQARSLVDGATVAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILRIHEVMATKTKIHLIVELAAGGELFSRISRRGRLPEATARRYFQQLVSALRFCHRHGVAHRDLKPQNLLLDGDGNLKVSDFGLSALPEQLKNGLLHTACGTPAYAAPEILRRCGGYDGSKADAWSCGLILYVLLAGYLPFDDSNIPAMCKKICRRDYQFPEWMTKPARFIIYKLLDPNPGTRMGLEALFCNAWFKKSLKAETAEENALDWENTNTKNNVYDKGSGLTAFDIISMSSGLDLRSLFETTSCRREKRFSSSARVEVVEEKVKEVGGVLGFKVVEVGKSNSAGIALVKGKVVLVFEVLEIVANELLWVAVKVVEGGLEFEEHHWEDWKSALQDLVLSWHHES 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01720 430 SUPERFAMILY Protein kinase-like (PK-like) 16 283 IPR011009 -
Cca02g01720 430 Pfam Protein kinase domain 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01720 430 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Cca02g01720 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Cca02g01720 430 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Cca02g01720 430 ProSiteProfiles Protein kinase domain profile. 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01720 430 CDD CIPK_C 309 420 - -
Cca02g01720 430 Gene3D Transferase(Phosphotransferase) domain 1 106 305 - -
Cca02g01720 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 12 428 - -
Cca02g01720 430 PANTHER SERINE/THREONINE KINASE 12 428 - -
Cca02g01720 430 Gene3D Kinase associated domain 1, KA1 306 424 - -
Cca02g01720 430 Gene3D Phosphorylase Kinase; domain 1 22 105 - -
Cca02g01720 430 Pfam NAF domain 308 361 IPR004041 GO:0007165
Cca02g01720 430 SMART serkin_6 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01720 Cca-Chr2 36228437 36230168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01720 4 429 Miscellaneous Gene Families AT3G23000 57.773 3.09e-168 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca02g01720 Pkinase 7.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01720 K12761 - gmx:100784173 686.411