Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01719 ATGGCAGGATTGGAACTCATACCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTCTTGAAAACAGCTTCCGCAGCATCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGCTCTTTCAAAACATCTATTAGATATTGAGCCAGTGCTAAAGGAATTACAACTTCAAGAATTGAACGACTCTCAAGCCGCAAGAGTTGCTCTGGACTCTCTTGAAGCAGATGTTAAGGAAGCAAATAATTTGGTGGAGAAGTATAAGAACCGTGGCCGTTTTTACTTGCTAGTTAAGTGCCGATCCATAGTTAAGGAGGTTGAACAAGTCACCAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGACTACAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAAATTCAAATTGTTGACAAGTTGAACGAGGGACTCAGAGAACAGAAACTAGATCAGGCTTTTGCAAATTACATGGTAGAGGAGATAGCAAGGGCAGTTGGGGTTCCAGTGGAACCCTCAGAGATAAGCAAAGAGCTTGATAGCATTAGGAAGGAAAAAGAAGAAGCTGCCCAAAGGAAAGAAAGAGCTGAATGTGTTTTTTTGGAGCAGATCATTCAGTTACTCTCTAGAGCTGATGCAGCAAGGGATTATGAAGAAGTGGAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAAAAGTATATCCCCCCACTCAATCCTTTCCTTTGTTCGATAACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACTTGTGAGAGATCTGCTATTGAAGCTTGGTTTTATGATGGCAACAGGACAGACCCAGAAACTAAAGAGGATCTTGAAGATACTACCTTGAGGTCTAACATTCCTTTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTGATAATTAGGTCTATCAGGGAAAATTTATTATCAAATTCTGACCTGCAAGAATCCCTGAGCCAAATGCAGGCTCTAGTAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATAATGTTATCTCTATCCTTGGGAGATCTGATGACAGAGAAGTGAAGATGAAGATTTTGATAACTTTGAAGGATGCTGTAGAGGGGAATACAAGAAATAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCACATTATTTCTTGCTTAGGGAGTGACTCTAGCATTTCAAAGGCAGCAATTAATTTGCTATATGAGTTGCTTCAAGAACAATCTGGTTGGAATCAATGTCTCTGCAAAAAGCTTTCTGAAAATCGCACTGCAATTTGGTCCCTTGTTTCCCTTCTAAAGAATTCTATCAACCCCTCTTCTGAGGTAGCAGAAAAGATTTTGATGATGGTTTTTGAACTAAATGAGGAAAGCATTACTATTGCTGCTAATCTTGGCTGGTATAAACCACTTGTTGATCGCATGATTCAAGGACCGGATTCAAGAATTTCAATGGCAAAAGCAATAGTTAATTTGGAGTTGAGTGATTTAAACATGAAACTCCTTGGCAAGGAAGGAGTTATACCTCCTTTGCTAGAAATGCTGTCGGGCAGTATTGAATCAAAAGACTTGTCATTGTCAGCCCTGGTTAAATTAGCAGGATCTCATGCCAATAAGGGAATAATCGCAGCATCTGGAGGAGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGCCACTGACATTCATTATCATCAAATGCTCTGAAATCATTGAGAAGCTTTCTTCAGATGGTAATGGAATTGATTTCTTTGTTGATGGAGAAGGCAAAGAACTTGAGTTAGATTCTATCATCACCAATTTGCTAGCTTTGCAGCAGATTTCCCACCATGATCACAACATCCGTAAGCATGCACTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTAGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGACTCTGACTCAGAGATCAGGGAGACTTCCATAATTCTTCTCTTTCTTTTCTCGCAACATGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTGGAAGCCTTGATTGGATTTCTTGAGAATGAAGAAAATGATAATGTGCAGATGGCTGCTGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAGCTGGGAGGACTTGATGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAACATTGAGTCACAGCGAGATTTGGTTAAACGAGGGATTTATCCTTTGCTTGTGAATTTTCTCAACACTGGCTCGGTCACAGCAAAAGCAAGAGCAGCAGCATTCATTGGTGATCTTTCCATGAGCACTCCAAAGCTCACAGTTGTTCCCAAACCAACTGGTTGCTGGCTTTTCAGATCATCTCGTGTTCCTTTGTGTCCAGCACATGGGAGTGTATGCAGTGCCAACACCACGTTTTGTCTCTTGGAAGCAAAGGCTTTACCTGGCTTGATAAAGTTGTTGCATGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCCACGTTGGTTTTGGAAGACTTTCCTCAAAGAGGAGCTCGTGTTTTGCATGATTCAAATGCAATAAGATCCATATTGGACATTTTGAACTGGGGAACTGATTCTCTCAAAGCAGAAGCTCTAGGACTATTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTTGAATACCATGGAACAACAGCTAGATCACGTCTAATTGGTTTGACTGGCATGAATATATATGGAGATGGCCACCTCAGGAAAAAAGCTGCCAAGGTACTATCATTGCTTGAACGATACTCAAAGTCGTCATCATCTGCAATCTCTGGAGTTCTGGAGTGA 3042 0.4083 MAGLELIPIGTILTVVTNQVLKTASAASDVLIGKESFKALSKHLLDIEPVLKELQLQELNDSQAARVALDSLEADVKEANNLVEKYKNRGRFYLLVKCRSIVKEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDKLNEGLREQKLDQAFANYMVEEIARAVGVPVEPSEISKELDSIRKEKEEAAQRKERAECVFLEQIIQLLSRADAARDYEEVERQYFERVKVIERYDSREKYIPPLNPFLCSITGAVMEDPVSLCTGTTCERSAIEAWFYDGNRTDPETKEDLEDTTLRSNIPLRQSIEEWRELNYCLIIRSIRENLLSNSDLQESLSQMQALVRENSINKDWISIGELTDNVISILGRSDDREVKMKILITLKDAVEGNTRNKEKVAESQGWDHIISCLGSDSSISKAAINLLYELLQEQSGWNQCLCKKLSENRTAIWSLVSLLKNSINPSSEVAEKILMMVFELNEESITIAANLGWYKPLVDRMIQGPDSRISMAKAIVNLELSDLNMKLLGKEGVIPPLLEMLSGSIESKDLSLSALVKLAGSHANKGIIAASGGVPLILDLMFSPRPLTFIIIKCSEIIEKLSSDGNGIDFFVDGEGKELELDSIITNLLALQQISHHDHNIRKHALRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENEENDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSSRVPLCPAHGSVCSANTTFCLLEAKALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHDSNAIRSILDILNWGTDSLKAEALGLLEKVFVSKEMVEYHGTTARSRLIGLTGMNIYGDGHLRKKAAKVLSLLERYSKSSSSAISGVLE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01719 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Cca02g01719 1013 SUPERFAMILY ARM repeat 368 714 IPR016024 -
Cca02g01719 1013 Gene3D - 857 1009 IPR011989 -
Cca02g01719 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Cca02g01719 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Cca02g01719 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Cca02g01719 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Cca02g01719 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Cca02g01719 1013 SMART arm_5 871 912 IPR000225 GO:0005515
Cca02g01719 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Cca02g01719 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Cca02g01719 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Cca02g01719 1013 Gene3D - 8 125 IPR036537 GO:0007166
Cca02g01719 1013 Coils Coil 127 154 - -
Cca02g01719 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Cca02g01719 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Cca02g01719 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Cca02g01719 1013 Coils Coil 62 89 - -
Cca02g01719 1013 SUPERFAMILY RING/U-box 249 330 - -
Cca02g01719 1013 Coils Coil 197 217 - -
Cca02g01719 1013 Gene3D - 516 845 IPR011989 -
Cca02g01719 1013 SUPERFAMILY ARM repeat 644 1001 IPR016024 -
Cca02g01719 1013 Gene3D - 339 501 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01719 Cca-Chr2 36203753 36209439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01719 265 968 U-box Gene Family AT1G20780 28.552 8.49e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01719 - - gmx:100783638 1743.78