Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01704 ATGGAGGGAAGAGAGAATTTTGGTGTTGTGGTGGGTGATGAAGCCCCAGAGAGCTTCCATGTGGCTCCTAGAATTGAGAACAACTTGGACTTTTCAAGGGCCACCGTGCCGGTGCCGGCGCCGGCGCTGGGGACGGAGGTGAAAAAGAAGAGAGGGAGGCCTAGGAAGTATGGGCCGGACGGCAAGGTGGTTGCGGGGGCGGTGACGGCGCTTTCTCCGATGCCGATTTCGTCGTCGATTCCGTTGACCGGCGAGTTCTCCGCTTGGAAGAGGGGTAGAGGGAGGCCTATTGAATCTATCAAGAAGTCTTCGTTTAAGTTTGACGTTGAAAGCCCTGGAACAGGTGAGGGAATCGCATACTCAGTTGGTGCCAATTTCACACCACACGTGCTCACAGTAAATGCTGGCGAGGACGTCACTATGAAGATCATGTCCTTCTCTCAACAAGGATCACGCGCTATATGCATTTTGTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCGTCTTCTTGTGGTGGTACTTTAACGTATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACAAGAAGCAGATCTGGTGGGATGAGCGTCTCTTTGGCTGGTCCAGATGGTCGAGTAATGGGGGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCAGTGCAGGTTGTGGTGGCTAGTTTTCTCCCTGGTCATCAGTTGGAGCATAAATCCAAGAAGCAAAGGGTGGAGCATATATCAACTATTACCCCTACACCTGTTAATCTTATCTCTGGTGAGGAAGTTAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTTTAACAATGGTCAAGACTCTAGGAACTCATCTGCTGATGATAGAGAGCCGTTACCTGAAAAGGAGTCTAACCAAAGTCAATCAAATGCTGAGGCTGCACGCTAA 999 0.4905 MEGRENFGVVVGDEAPESFHVAPRIENNLDFSRATVPVPAPALGTEVKKKRGRPRKYGPDGKVVAGAVTALSPMPISSSIPLTGEFSAWKRGRGRPIESIKKSSFKFDVESPGTGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKSKKQRVEHISTITPTPVNLISGEEVKVSFGGVKPIMTPAAFQEENIASFNNGQDSRNSSADDREPLPEKESNQSQSNAEAAR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01704 332 Gene3D - 128 261 - -
Cca02g01704 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 244 - -
Cca02g01704 332 CDD DUF296 127 241 IPR005175 -
Cca02g01704 332 MobiDBLite consensus disorder prediction 294 332 - -
Cca02g01704 332 ProSiteProfiles PPC domain profile profile. 123 265 IPR005175 -
Cca02g01704 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 320 IPR039605 GO:0003680
Cca02g01704 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 241 IPR005175 -
Cca02g01704 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01704 Cca-Chr2 36004701 36010982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01704 46 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 63.786 4.35e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01704 - - gmx:100789179 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01704 02 36004701 36010982 Cca08g00519 08 8430137 8436060 ECH
Cca02g01704 02 36004701 36010982 Cca02g01704 02 36004701 36010982 ECH
Cca08g00519 08 8430137 8436060 Cca02g01704 02 36004701 36010982 PCT