Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01697 ATGGCTTCTCTGTCGGCTTCCACCGCGTCTATGTCAGAAATGCTCGGAAACCCCGTGAGCCTGAGAGGCGCCACCAGGTCTGCTCCGTCGGCATCTACACCTGCCACCTTCAAGACCGTTGCACTTTTCTCCAAAAAGAACGCAGCACCACCACCTCCCAAGAAAAATCCTGCTGCTGTATCCCCCGCCAATGAAGAACTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGATGGTCTCTTGGACCGATCAGAGATCCCTGAGTACTTGACTGGAGAAGTGCCTGGAGATTATGGTTATGACCCGTTTGGTCTTAGCAAGAAGCCAGAGGACTTCGCCAAATACCAGGCGTTTGAGTTGATTCATGCTAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTTAACAAGTACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACTGGAGCTTTGCTTCTTGACGGGGGTACGTTGAACTACTTTGGGAAACCCATCCCCATCAATCTTATTGTTGCTGTTATTGCTGAGATAGTTCTTGTGGGTGGTGCTGAGTACTACAGAATTACTAATGGCCTGGATTTCGAAGACAAGCTTCATCCAGGTGGTCCATTTGATCCATTGGGGCTAGCAAACGATCCTGACCAAGCTGCACTGCTAAAGGTGAAGGAAATTAAGAATGGTAGACTTGCTATGTTTGCAATGCTTGGCTTCTACTTCCAAGCTTATGTGACTGGAGAAGGTCCAGTTGAGAACTTGGCAAAACATCTCAGTGACCCTTTTGGTAACAACTTGCTCACGGTCATTGCTGGCTCTGCTGAGAGGGCTCCAACTCTGTAA 867 0.4925 MASLSASTASMSEMLGNPVSLRGATRSAPSASTPATFKTVALFSKKNAAPPPPKKNPAAVSPANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRITNGLDFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01697 288 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 288 IPR001344 GO:0009765|GO:0016020
Cca02g01697 288 Gene3D Chlorophyll a/b binding protein domain 77 288 - -
Cca02g01697 288 SUPERFAMILY Chlorophyll a-b binding protein 70 279 - -
Cca02g01697 288 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 288 - -
Cca02g01697 288 Pfam Chlorophyll A-B binding protein 90 251 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01697 Cca-Chr2 35921529 35924014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01697 1 288 Chloroplast and Mitochondria Gene Families AT4G10340 80.623 7.65e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01697 K08916 - gmx:100817348 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01697 02 35921529 35924014 Cca02g01697 02 35921529 35924014 ECH
Cca08g00509 08 8202025 8205359 Cca02g01697 02 35921529 35924014 PCT