Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01688 ATGGTCGTCAGCGGAGGGAAGGGCTTGAAACGAGCCAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTTACGTTCCCCTCGCCGTCCCTCGCCGAGTCGGAAAGCTTCGCCGGCGGACCGTTCCGCTCCAACGTCCGCTCCTTCCTGACGAAGCACGCGCTGCTTCCGCCACCGTCCGCGCTGTTCCCGCACCTGCTGACGTGGCAGATCCTCTTCCGCGTCGGCGAGCTCACCGAAGGCTCCGAACCGCTGGTGGTGTGCCTCGACGTCGTGGAGGAGGACGTCGCCAGATCCAGATCCGTGTACTGCGATCAGTGCCGAGTTTTTGGTTGGAGCGGTCACCCAGTGTGCGCGAAGCGGTACCATTTTATAATCAAAGCCGATGGGAGTTCTATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAACCATGTGACTACCACTGATGATGTCGAAGACTGGGTTTACCATCAATTAGAGAACACAACTCATCTTTTACATGGCGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTATTTCTGGTTGTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATACGGGTTAGAGTATCGCTTGCTCCATGCCATTACGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACACATGAAGCATACACATCTGCAGTTGAAAGCCTATCCAATATACCGTTGTCCACCTTTTCCCAGGGACAGATGCCTCACTCTCGTGTGCAGGACATGATCTCATATTACCAGTCCTTGTCAGAGCATAAGCTTGTAAATATAAGGGACCTCTTTCGTTTCATGATGGGTTTGATTGGTGATGCTCGCAAGAATGCATCAAATACTGATGACACATCCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATTTCTTGGGATAAGAGTGACATTGAACGTGTGGAGGAAGCCATGGTCAGAGTGCTGCGTGCAGTGTCTGAGACTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGAGCAGCCTGCAAGGTGGGCCCTCCAGAGCTGCTTGATTATTGCCTTGGAGAAATGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTGAGACTCGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCGAACAATAATTCTTCAGGCTCGAAGTATCCATCTGAAGAAAACCTCTTACAATGCTTGAGATATTTGTATGACTCTCTGCTTCATCCTCAGATGATGGTAAACTATGTTGAAGCAGGGACAAGGGCTCTTGCAATGACCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTTTAGTCCTGAGATGTTGCCATTGTCAGATTTGCTGAAGTTACGCATCTCATGTCAGGTTGAACTTTTAGATGAAGCTGAAGATTCAGAAGCTATAACTCCACCAGAATTAATTGTGATGCCCACGAATGCTACGTTGGCTGAGCTTAAGAACCAAGCAGCAAATGCATTTCAAGATGTTTATCTAATGTTCAGGAGATTTCAGGTTGATGAGGTACTTGGCTATAGCGGTGTTGACGATTCCACCCAGGTCAAGCACTTGTTAGGATCGAAAGATGTAGTTTGTGTCCGAGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCTAAGGATGATGACGGAGAGAGAATGTTAGCGTGTGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTCAGATGCCAAAACTCTGAAGCCAAACCCAAATCTAGTGGGCACTGCAAAACTGAGACTGTCACTAACGTTAGTACTAGTGCTAGTTGCTTCGGAAACGGCTTGCCAGTGCCATCTGATGTTCGTTAA 2127 0.4814 MVVSGGKGLKRAKKRVTADFYDFLTFPSPSLAESESFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRVGELTEGSEPLVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCAKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFISGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGHPWYGDWGYKFGSGSYCLTHEAYTSAVESLSNIPLSTFSQGQMPHSRVQDMISYYQSLSEHKLVNIRDLFRFMMGLIGDARKNASNTDDTSCKKRRFNASGLSISWDKSDIERVEEAMVRVLRAVSETKWVSWRALRGAACKVGPPELLDYCLGEMGGKMVYGGMVVNSRCNPQTGVYELRLEAATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYVEAGTRALAMTSAQKLFDCKQFVKDFSPEMLPLSDLLKLRISCQVELLDEAEDSEAITPPELIVMPTNATLAELKNQAANAFQDVYLMFRRFQVDEVLGYSGVDDSTQVKHLLGSKDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLRCQNSEAKPKSSGHCKTETVTNVSTSASCFGNGLPVPSDVR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01688 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 182 192 IPR020549 -
Cca02g01688 708 SMART PHD_3 624 670 IPR001965 -
Cca02g01688 708 CDD PHD_MMD1_like 624 669 - -
Cca02g01688 708 PANTHER OS01G0877500 PROTEIN 1 681 - -
Cca02g01688 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Cca02g01688 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 677 IPR013083 -
Cca02g01688 708 SUPERFAMILY FYVE/PHD zinc finger 613 672 IPR011011 -
Cca02g01688 708 Pfam PHD-finger 625 671 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01688 Cca-Chr2 35831747 35837371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01688 77 669 PHD Transcription Factor Family AT5G22260 31.703 3.34e-90 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca02g01688 PHD 9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01688 - - gmx:100818189 1315.44