Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01686 ATGGATTCTAGCAGTTTTCAATGTGACAAAAGGGTAGATAAAAAGATAATAAGATACAAAGAGTGTCTTAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGTTGTGGTGAGTTCATGGCTGCTGGAGAAGAAGGAACCCTTGAAGCTCTCAAATGCTCAGCTTGCAATTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCATCATCTGATTCTAATTCCACTCCTCTCATGATTATTCCGGACACTACTCAGATAAGGCCAATGTTGACTTATTTATCTCCCAACAAGAGTGGCTCAATTAGTCCTTCTGATCAGAGTGATGAGAAGGACTACGAAGATGGGATAGTTAAGGAGGTGGAGAATCCAAATGAAAAGGTGAAGAAGAGGTTCAGAACCAAGTTCACACAAGAACAGAAGGAGAAGATGCTGGATTTTGCAGAAAGAGCAGGGTGGAGAATACAGAAGCTAGATGAATCTGTGGTGCAGAAGTTTTGCCATGATGttggaatcaagagaagagtcttcaaagtgtggatgcataataacaagaacacttttgccaagaaaAATCCCTCCACTTAG 594 0.3737 MDSSSFQCDKRVDKKIIRYKECLKNHAAAIGGNATDGCGEFMAAGEEGTLEALKCSACNCHRNFHRKEIESSSDSNSTPLMIIPDTTQIRPMLTYLSPNKSGSISPSDQSDEKDYEDGIVKEVENPNEKVKKRFRTKFTQEQKEKMLDFAERAGWRIQKLDESVVQKFCHDVGIKRRVFKVWMHNNKNTFAKKNPST 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01686 197 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 131 188 IPR006455 -
Cca02g01686 197 MobiDBLite consensus disorder prediction 95 115 - -
Cca02g01686 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 193 - -
Cca02g01686 197 SUPERFAMILY Homeodomain-like 127 192 IPR009057 -
Cca02g01686 197 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Cca02g01686 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 13 193 - -
Cca02g01686 197 Gene3D - 120 192 - -
Cca02g01686 197 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
Cca02g01686 197 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01686 Cca-Chr2 35816147 35816740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01686 12 194 ZF-HD Transcription Factor Family AT1G14440 51.759 9.52e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca02g01686 ZF-HD_dimer 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01686 - - gmx:100793926 337.806