Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01676 ATGGCAACTCGAAGATACGAGTTTGGAAGATCCGATGAGGCTAACCACCCAGACACCCTGAGAGCCACCTTGGCTGAGTTCATCTCCACTTGCATCTTTGTCTTTGTTGGAGAAGGCTCTGCCCTTGCTTTGAGACAGATTTACAAGGAACCAGGTTCCTCAGCGGGTGAGGTGGTGGTGCTGGCACTAGCTCATGCCTTTGCTCTATTTGCTGCTATTTCTGCCAGCGCGCATGTCTCTGGTGGACACGTCAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGCAGGATCTCCCTCCTTAAAGCCATTTACTATTGGGTTGCTCAACTTCTTGCTTCTATAGTCGCTGCCCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCAGAGGGGTTCAGTGTGTCGGTGGGCGTTGGAGCGTTTCACGGTTTTGTACTTGAGATTGCCCTCACATTTGGTCTCATGTACACAGTCTATGCTACCGCTATTGATCCTAAAAGGGGTTCAGTTGCCTCAATTGCACCCTTAGCCATTGGACTCGTTGTTGGGGCTAACATCCTCGCTGGTGGCCCGTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCCTTGGTGGGCTGGAGATGGGACAACCACTGGATCTTCTGGGTGGGCCCCTTGATTGGGGCTGCTCTGGCAGCACTCCTCTATGAATTCGTTATGGTCCCGATTGAGCCTCCTCATGCTCATCACCAACCTTTGGCTTCTGAAGATTACTAG 771 0.5188 MATRRYEFGRSDEANHPDTLRATLAEFISTCIFVFVGEGSALALRQIYKEPGSSAGEVVVLALAHAFALFAAISASAHVSGGHVNPAVTFGALLGGRISLLKAIYYWVAQLLASIVAALLLRLVTNNMRPEGFSVSVGVGAFHGFVLEIALTFGLMYTVYATAIDPKRGSVASIAPLAIGLVVGANILAGGPFDGACMNPARAFGPALVGWRWDNHWIFWVGPLIGAALAALLYEFVMVPIEPPHAHHQPLASEDY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01676 256 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cca02g01676 256 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 PANTHER AQUAPORIN-8 1 256 IPR034294 -
Cca02g01676 256 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Cca02g01676 256 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01676 256 SUPERFAMILY Aquaporin-like 14 248 IPR023271 -
Cca02g01676 256 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 256 - -
Cca02g01676 256 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01676 Cca-Chr2 35682221 35684101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01676 2 256 Major Intrinsic Protein MIP AT1G73190 67.803 2.71e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01676 K09873 - gmx:100814469 436.032