Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01664 ATGACAATGCCTCTTACTCTAAGGAATAAGCTCAAGACTCTTTGTACTTGGGGTGATGGATGGTCTTATGCTATTTTCTGGCGCTTTCATCCAAGGAATTCCTTGTTGTTGACTGTGGAAGAAACATACTGTGAAGAGCATTTGGGAAAAGAGATTGCCAACATGCTTCCACAGGTCCACTTGCTGGGTGAAGGAATTGTTGGTGAAGCTGCTTTCACGGGGAAGCACAGTTGGGTGCACTCAGATGGTCAAACTCATGATTGGGATTTGACTGGGCAGAATGTGTGTGAGGATGATTCTGGATTGCATCAACAATTCTCCTCTGGAATAAAGACTATTGTGGTCATACCTGTCAAAGCAAGCGGCGTGGTACAGTTTGGATCCAGAAAGAAGATTTTGGAGAGTGTGGAATTTTTGGAGCAAACACAAAGCGTGCTCACGGAGATAGTTGATGATATGGGTATGCTTGACATGCCAGGAAATGCTGTTTTACCATTGGATTATGAAAATAATGATTTAAATGGGTTGTTGGCTTCCATTTATTCCATTAGTTCCAACAATCCCTTCCCTTCCCAATATAAGACTTATGAAGAAGCGATGCCTTCGTTGCAAAGAGATTCTTCTTATCTTGGTGACCAATTGAAAGCTACCGTGGAAGCTCAAGTTATATTATCAGATATGCTTTTGAAGCCCAACTCTTCTATGAACAACTTAATTCCTCAAAACCCCAGTTTTGGTGCATGTGGCGATGAATTATCTGCTTTTGAATTGTTGGAGCAACAATTGGTATCCGATGCAACGGCACAAGAAGTTGCAGATGTTTGTTTTACGAACGAAAATGCATTTACTAAGGATTCAGTGTTGACCTCATTGTGCAGTATGGACAGAGGGTCATTTCAAGGCATATTACAAAATTCACTGGATAACCAATATTCAACCCAGTCTAGTGTTGTGACAGATGTTGGTTTTCCCTTAAGTTCAAATTCATTGCATGGACACTCTAAGAATTTCGAACCTGTTGATATGTCGGAAGAAATTTTGAAGTTCAGCTCTATGGATGATCTTTGTCAGTGGTTTGTTTCTACTCCAGAGGATAGTATCAGCAAAGCAGCAATTGCGTTGGATAACAACTTTTCTGAATCAACAGAATTTAATCCCACTTCCTTGGATCTTGTTGGAAATAGTTCTATAAATGATATTTCAGTGACCTACCAATCTGTACATAATTCAAACACCGATGGGAAAGAAACATCTGTGGTTATGCATAGCAACGAAAAAGATCTCTTGGATAGCATGGAACTTGATTTTAGCTATGATCAAGCTCATGAATGGTGGGGGAATATGCTTACACCAGTAATGAGTGGTGTTACTGATACTGGCTTCTCTGAATGCATATCAGAGTTGAATACTGATACACTATCCGGCACCCGGAAGAGATTATTCACTGAGTTAGGAATTGAAGAGCTACTGAGGAGTGCAGCAAATTACAATCCTTTTAATACTTCTGACATTGAGCATGATTTATCAAGCAATAAGAGGCAGACAATAGAATCTTCACCAGTGAATAGAAATCCAATACATTTCACCAACCTTTATAGAATGCCTGGGGCTAAAGCAGACTTGTTGCATCCACTTTGTGACTTAGACAGCACAAACAATCTTCAAAGCAAGAAAGATACATTCCCAAAATTACAAGCAGGCATGCGGATTGATGATAGCCATAGCATTAATATTGGAAAGGCTGTTTCATTACACCCTAAAAAGCCAGAGGAACCCACAAAGCTTACTAAGAAGAGGGCAAGGCCCGGGGAGAGTACTCGACCACGGCCAAAAGATCGTCAGCAAATCCAAGATTGTATTAAAGAGTTGAGAGGAATCATCCCCAATGGTGGAAAGTGTAGCATTGATTCTTTATTAGACCGCACCATCAGATACATGCTTTTCTTACAAAGTGTGCTCAAGTATGGAGACAAGCTACATGAACCAAATGAGCCAAAGCTTGTTGAACAGGAAAATGAAGTGGTTCTAAAAGACAGTGGTGTGGCGGATAGCAAAAACGGTGGCATTACATGGGCATTTGAAGTGGCACACCAAACCATGTTATGCCCAATTATAGTTGAGGACATGAGTCTACCTGGACAAATGCTTATCGAGATGCTTTGTGAGGAAAAGGGTTTCTTCCTTGAGATAATTGACTTAATTAGGGGTTTGGGGCTGAATATCTTGAAAGCCAAGATGGAAAGAAGGAAGAACAAATTATGGGCACGCTTTATTGTTGAGGCAACCAGACACGTGACAAGGATAGATGTGTTTTGGTCCCTTATCCATCTTCTACAGCAAACAAACAACTCTGGCGTTGATTCTTCTAATAAACATAGCGATGTCATTGATGCCAAAATTTAG 2403 0.4049 MTMPLTLRNKLKTLCTWGDGWSYAIFWRFHPRNSLLLTVEETYCEEHLGKEIANMLPQVHLLGEGIVGEAAFTGKHSWVHSDGQTHDWDLTGQNVCEDDSGLHQQFSSGIKTIVVIPVKASGVVQFGSRKKILESVEFLEQTQSVLTEIVDDMGMLDMPGNAVLPLDYENNDLNGLLASIYSISSNNPFPSQYKTYEEAMPSLQRDSSYLGDQLKATVEAQVILSDMLLKPNSSMNNLIPQNPSFGACGDELSAFELLEQQLVSDATAQEVADVCFTNENAFTKDSVLTSLCSMDRGSFQGILQNSLDNQYSTQSSVVTDVGFPLSSNSLHGHSKNFEPVDMSEEILKFSSMDDLCQWFVSTPEDSISKAAIALDNNFSESTEFNPTSLDLVGNSSINDISVTYQSVHNSNTDGKETSVVMHSNEKDLLDSMELDFSYDQAHEWWGNMLTPVMSGVTDTGFSECISELNTDTLSGTRKRLFTELGIEELLRSAANYNPFNTSDIEHDLSSNKRQTIESSPVNRNPIHFTNLYRMPGAKADLLHPLCDLDSTNNLQSKKDTFPKLQAGMRIDDSHSINIGKAVSLHPKKPEEPTKLTKKRARPGESTRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDRTIRYMLFLQSVLKYGDKLHEPNEPKLVEQENEVVLKDSGVADSKNGGITWAFEVAHQTMLCPIIVEDMSLPGQMLIEMLCEEKGFFLEIIDLIRGLGLNILKAKMERRKNKLWARFIVEATRHVTRIDVFWSLIHLLQQTNNSGVDSSNKHSDVIDAKI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01664 800 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 5 799 - -
Cca02g01664 800 MobiDBLite consensus disorder prediction 577 615 - -
Cca02g01664 800 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 145 IPR025610 -
Cca02g01664 800 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 46 IPR025610 -
Cca02g01664 800 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 613 655 IPR036638 GO:0046983
Cca02g01664 800 MobiDBLite consensus disorder prediction 584 615 - -
Cca02g01664 800 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 600 649 IPR011598 GO:0046983
Cca02g01664 800 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 5 799 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01664 Cca-Chr2 35548884 35553873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01664 597 788 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.167 5.48e-63 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01664 - - gmx:100813558 1263.06