Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01648 ATGATGGGGACTGAGCTTATGAGAGTATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAATCATACACATCTTTCTCACTGAAGAGGGTAGAAAACAATGATAAACAAAATGATAAAAATATGACCAGTTCAGCCTCTACAAGTGCTTCTGAATCACCTTCAACTCAGGTGGAAAATGATGTTCAAGTTTGTGATACTGCAAAGGTTCCTAGATCCCTTCGACGAAGACCATGGATTAATTATGGACAATATGAGAACTGTTCAGATGAAGACTCTGACTGTGAGCCGCTTGATCAAAATTTTTCCTCAAGACCTTGTCTTCCTCGGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAGAAGGTTGTTGCCAGATGGCGACCAGAAGAGGCTCGTAGGCCAAATATTGAGGACGCTCCTGTTTTCTACCCTACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCTAGGGCCGAGCCATATGGAATTTGTCGCATTGTTCCACCGTCTTCTTGGAAACCTCCTTGTCCTCTCAAAGAAAAAAGTACATGGGAGGGTTCTAAGTTTGCTACACGTGTTCAGAGGATTGACAAACTACAGAATCGTGATTCAGTGAGAAAGATGTCAAAGGTTCAaagtaatatgaagaggaaaagaagaagatgcacaagaaTGGGGGTGGATAATGGCACTAGAAGAGGACCTAATGCAGGTTTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACTTTGGAAACATTTCAGAGATATGCCGAAGATTTTCGGATCAAATACTTTGGAAAAAATGAGAATGTATCTCATTTGGGTGCTAATTCAACAATTTTAAATGGTACCTTGGAGCCTTCTGTGGAGAACATTGAAGGTGAATACTGGCGAATGGTTGAGAGTCCTACGGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACAGGGGTTTTTGGAAGTGGTTTCCCCAGCAAATCTAGTCATATTGGTTCTGCTTCACATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTACATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGAGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAGGATGCCTGCAAATTGGAAGAAGCCATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTGAAGTCTAAAGGAGTACCAGTTTTTAGGTGTGTTCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAATTGTGCTGAGGCTGTTAATGTAGCCCCTGTTGACTGGCTGCCCCATGGACATATTGCTATAGAGCTGTACCAGGAGCAGGGGCGCAAGACTTCTGTATCACATGATAAGTTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTGCTAAAGAAAAATACTTTGGATAATCTACGATGGAAGGATGTTTGTGGGAAGGACGGCCTTTTGGCAAAAGCACTTAAGATGCGTGTTGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTTCTTCACAGGCATTAAAAATGGAGAGTACTTTTGATGCTACAGATGAAAGGGAATGCAACATTTGCTTTTTTGATTTACATCTATCTGCTGCTGGTTGCCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGGATTCCAAATTTTTCCTCTTTCGGTATGATATTAGTGAACTAAATATTCTTGTGGAGGCATTGGAAGGAAAATTAAGTGCAATATATAGATGGGCAAAATTAGATCTTGGGCTGGCACTATCTTCACATGTCTCAGCAGACAAGGGAACAGTACTTATGGAATTGAACTCGCGTTCATCTAATTTGTCTCATTCTTCTAGAGCAACTGTGCATAAAGAGACAGCTTTGCATCCCTCAAATAAATTTATTGACGATTCTCAATTGATTGATGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCATAGCCCTTTTCAACCAAGGAAATCAGCTGAATCTACTTCATCTCTGAGTTCCACGAAGGATTTGCTAACATTTAAAAGCTCAAAACCTACATGTGAGACAGCTAATCATAAGATATGTGTTAATAAAGAAGAATCTGTTATTTGCAGATCAAAGATGAGAACCCCTGGCTGTCAATTGTCTCAAGAGGATACACCAAATGCTTTATCTCTGCCTCTTGCTCAACACGGAGGTGAAAAAAGTTCACTTTACAGACATAATAACAATGTTATACTTCTCAGTGATGATGAAGATGATGAAAAGAAGATTCCCTATTCAAATAGAGGGAAGGAACTTCCTTATATGCTCGCAGGTCCTAGAGATAAGGTGAGCCCATGCAATGATATAGAAAATAAAAACTTGACAGTTTCTGTGACAGATACTCCTATGATTAGTGAAAAGGATGCTATTACATTGCCCCGTGAAAATATGAGTTCTGATTCAACACGGCTTTTGCGTGTGAAAGAAGAATGTCATGAACACTCAGGAACAGTTCTGGCCTTTACCCCAGTAGATCTTTCTTGTCATATAGGTCTTACAAGTACAGAATCTGCTAGAAATATTCCAACGTCTTCAAAAGTAGAGGCCAGTGATAATTGTTTGGAGATTTGTCCTCTGAAACCACAACATTCTGGCATTAAGGTTAAGACTGAAGATAATCATGAAAAACTTGGAGGATGTGCCACTTCTAATGTAGCGGACAATGCAAGAACGGCTAATGGTAACTTTTCTTGTGGTCCAAATAATTACCGTCAGAAAGGTCCTCGGATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCGAAGGGATTTAGAAGCCGCGTTAGATACATCAATGTCTTAGACCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCGTTAGAAAATTGTTCAAGTGAGGCCTTCATCCATATGTCAGCTGCAAGATGTTGGGAACTGGTCAGAGAGAAAGTGAATCAAGAAATCGCAAAGCAACATAAGTTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAAGCACTGGATCGAAGTCGAGTATGTAATGAATATTGGGACTCAAGGCCCTACTCTCGTCCTCAAGGACAGATTTCACAAACATGCCAAACCAATGGAAATGCAAATGGTGGAAATAGTGACAGGGTTCTCTTGAATAAGCCCACTCCCGTTGGAGTTGTTGCAGTACTAAGGAACCTATTCAAAAAGGCCAATGCAGAAGAATTGAACTTATTGTACAGCATTCTTAATAGGCCAGCGGCTGACACAAACCTAATTGCGCAACTTCTCAATGAAGAGATTCACAAATTACAACCGCCTTAG 3768 0.4079 MMGTELMRVCVKEDNDDFPSVPPGFESYTSFSLKRVENNDKQNDKNMTSSASTSASESPSTQVENDVQVCDTAKVPRSLRRRPWINYGQYENCSDEDSDCEPLDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEEARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSTWEGSKFATRVQRIDKLQNRDSVRKMSKVQSNMKRKRRRCTRMGVDNGTRRGPNAGFCEVERFGFEPGPEFTLETFQRYAEDFRIKYFGKNENVSHLGANSTILNGTLEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPSKSSHIGSASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVFRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSVSHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGLLAKALKMRVEMERARREFLCSSSQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFRYDISELNILVEALEGKLSAIYRWAKLDLGLALSSHVSADKGTVLMELNSRSSNLSHSSRATVHKETALHPSNKFIDDSQLIDVPIENQANSKDHSPFQPRKSAESTSSLSSTKDLLTFKSSKPTCETANHKICVNKEESVICRSKMRTPGCQLSQEDTPNALSLPLAQHGGEKSSLYRHNNNVILLSDDEDDEKKIPYSNRGKELPYMLAGPRDKVSPCNDIENKNLTVSVTDTPMISEKDAITLPRENMSSDSTRLLRVKEECHEHSGTVLAFTPVDLSCHIGLTSTESARNIPTSSKVEASDNCLEICPLKPQHSGIKVKTEDNHEKLGGCATSNVADNARTANGNFSCGPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCSSEAFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPQGQISQTCQTNGNANGGNSDRVLLNKPTPVGVVAVLRNLFKKANAEELNLLYSILNRPAADTNLIAQLLNEEIHKLQPP 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01648 1255 Gene3D - 1028 1165 - -
Cca02g01648 1255 SMART cupin_9 359 522 IPR003347 -
Cca02g01648 1255 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Cca02g01648 1255 Pfam F/Y-rich N-terminus 1034 1076 IPR003888 GO:0005634
Cca02g01648 1255 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Cca02g01648 1255 PANTHER LYSINE-SPECIFIC DEMETHYLASE 76 769 - -
Cca02g01648 1255 PANTHER LYSINE-SPECIFIC DEMETHYLASE 976 1252 - -
Cca02g01648 1255 ProSiteProfiles FYR domain FYRN motif profile. 1021 1079 IPR003888 GO:0005634
Cca02g01648 1255 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Cca02g01648 1255 Coils Coil 569 589 - -
Cca02g01648 1255 SMART fyrn_3 1035 1079 IPR003888 GO:0005634
Cca02g01648 1255 Gene3D Cupin 132 506 - -
Cca02g01648 1255 SMART fyrc_3 1085 1179 IPR003889 GO:0005634
Cca02g01648 1255 MobiDBLite consensus disorder prediction 43 67 - -
Cca02g01648 1255 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Cca02g01648 1255 PANTHER JUMONJI 14-RELATED 76 769 - -
Cca02g01648 1255 PANTHER JUMONJI 14-RELATED 976 1252 - -
Cca02g01648 1255 SUPERFAMILY Clavaminate synthase-like 357 549 - -
Cca02g01648 1255 Pfam jmjN domain 148 181 IPR003349 -
Cca02g01648 1255 Pfam F/Y rich C-terminus 1084 1167 IPR003889 GO:0005634
Cca02g01648 1255 MobiDBLite consensus disorder prediction 32 67 - -
Cca02g01648 1255 SMART JmjN_1 146 187 IPR003349 -
Cca02g01648 1255 MobiDBLite consensus disorder prediction 744 764 - -
Cca02g01648 1255 ProSiteProfiles FYR domain FYRC motif profile. 1081 1171 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01648 Cca-Chr2 35332211 35342406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01648 2 1250 JUMONJI Transcription Factor Family AT1G08620 55.729 0.0 1273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca02g01648 JmjC 2.7e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01648 - - gmx:100800271 2272.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01648 02 35332211 35342406 Cca02g01648 02 35332211 35342406 ECH