Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01643 ATGAACTGGTTGGATTTCTTCCTCTACCCTCAAGAACAAAACGAAGACCACTCTCAAACGGAGAACCCTCTCATCGGCTTCAACACGCACGAAATCTCAGCCACTGATGTTTCTAGCGAGTGCTTTGATCTCACTTCATTCGGCTTAGTAGAATCACTCAACCGAAACAATACTCATCATATAACTCCTATAGATTGGTGCACCAAGGGTTTGGGAACTTCTTGCAGCGGTAGTAACGAAGACATGTATAACAACAAACCACAGCCGAAACTCGAAAACTTTCTCTCGGAGAAACCGGCAACCGGCGGTGGCGGTAGTCCAAAAAGCACCAACTCTATAGGGTTGTCTATGATAAAGACATGGCTGAAGAACCAAGCGTCACAGTCTGATGCTGCGAACACGTCGCTTTCCATGAGCACTACAGTGTCACAGTCAGGCACAGTAGCATTGCCCCTTCTAACAGCGAGCGTGGATGGAGAGAGTAAGCAACAACCTTCGACGACAGCACTTTACAATAACCAAAGCGAAGTTGTTAATCTTAGTACTGTGGCTAGAAAATCCCCTGACACAGTTGGACTTGGACAAAGGACTTCCATATACCGTGGTGTGACAAGGCATAGATGGACGGGTAGATATGAGGCTCACCTGTGGGATAATAGTTGTAGAAGAGAGGGGCAAACTCGAAAAGGAAAGCAAGTTTACCTGGGAGGTTATGATAAAGAAGAAAAGGCAGCTAGAACATATGATTTGGCGGCACTGAAATACTGGGGAACGGCAACAGCAACAAATTTTCCGATTAGCCACTATGAAAAAGAACTGGAAGAAATGAAGAACATGACAAGGCAAGAATACGTCGCATCACTGAGAAGGAAGAGCAGTGGTTTTTCTCGCGGTGCATCTATTTATCGAGGAGTAACGAGACATCACCAACACGGAAGATGGCAAGCTAGGATTGGAAGAGTGGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCTTATGACATTGCAGCCATCAAATTCCGAGGACTGAAGGCAGTTACAAACTTCGAAATGAACAGATACGACGTTAGGAGCATACTTGAAAGTAGCACTTTGCCAATTGGTGGTTCTGCCAAACGTTTGAAGGATGCTGAACAGGTCAATCTCACCATCATGGATCCTCAAACCCCTCACGTGCATCCTAACACCTATAATTTTGAAGCTTCTCCTCATCCTCTTGCATTCCATCAACCTCAGCCTTATAGCCACTTAAATTACTCTTATGGTCCCAAGTTTTGGTACAAGCAAGAACAACTTTCTGATGTTCCTCAAACATTTCAGGATTTTCATCAACTCCAACTAGGGAATGCACACAGTTTTCTTCAGGCCAGTGTCATAAGCATTGATTCTGCTTCCATTGGCaataataataatcataataGCTCTGCAGGATCTAACTCTTTCATTTATGGTGGTGGGGATGGTAACGATGTTCCCATGACCATGGCCACTTCGTTCATAGCAAATGATGTTGTTAATCAAAATAATGGTTTTGCGGATAATGATGGGAAGATGCTTGAATACGAAAATATGTTCAACCCTACTGATCCTTATCATGAAAGGAACTTTGTGTCATCTTTCGCAGCAAACATTTGGTGA 1665 0.4384 MNWLDFFLYPQEQNEDHSQTENPLIGFNTHEISATDVSSECFDLTSFGLVESLNRNNTHHITPIDWCTKGLGTSCSGSNEDMYNNKPQPKLENFLSEKPATGGGGSPKSTNSIGLSMIKTWLKNQASQSDAANTSLSMSTTVSQSGTVALPLLTASVDGESKQQPSTTALYNNQSEVVNLSTVARKSPDTVGLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGKQVYLGGYDKEEKAARTYDLAALKYWGTATATNFPISHYEKELEEMKNMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFEMNRYDVRSILESSTLPIGGSAKRLKDAEQVNLTIMDPQTPHVHPNTYNFEASPHPLAFHQPQPYSHLNYSYGPKFWYKQEQLSDVPQTFQDFHQLQLGNAHSFLQASVISIDSASIGNNNNHNSSAGSNSFIYGGGDGNDVPMTMATSFIANDVVNQNNGFADNDGKMLEYENMFNPTDPYHERNFVSSFAANIW 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01643 554 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 496 - -
Cca02g01643 554 SUPERFAMILY DNA-binding domain 300 360 IPR016177 GO:0003677
Cca02g01643 554 SUPERFAMILY DNA-binding domain 198 267 IPR016177 GO:0003677
Cca02g01643 554 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 3 496 - -
Cca02g01643 554 ProSiteProfiles AP2/ERF domain profile. 301 359 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 Pfam AP2 domain 301 351 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 Pfam AP2 domain 199 257 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 ProSiteProfiles AP2/ERF domain profile. 199 265 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 CDD AP2 198 267 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 SMART rav1_2 199 271 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 SMART rav1_2 301 365 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 Gene3D AP2/ERF domain 301 361 IPR036955 GO:0003700|GO:0006355
Cca02g01643 554 Gene3D AP2/ERF domain 199 267 IPR036955 GO:0003700|GO:0006355
Cca02g01643 554 CDD AP2 300 359 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 MobiDBLite consensus disorder prediction 80 110 - -
Cca02g01643 554 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Cca02g01643 554 PRINTS Ethylene responsive element binding protein signature 341 361 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01643 Cca-Chr2 35253130 35257102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01643 89 386 AP2-EREBP Transcription Factor Family AT5G17430 65.397 1.75e-130 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca02g01643 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01643 K09285 - gmx:100808723 602.053