Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01642 ATGGATCCAAGAGGTTTAGCGATGCTGGTGGCGATTCTAGTTGCGGAAATTGGTTTGGTCGCGAACGGGAATTTAGTGTTCCCGGTGGAGCGTCGGAGAAGGAGTTTAAGCGCTATCAGAGCTCACGATGCTCGCCGCCGAGGTAGAATTCTCTCCGCCGTGGATCTCAACCTCGGCGGCAATGGTATCCCTACTGAAACAGGTTTGTATTTTACGAAACTCGGGCTTGGCTCTCCTCCGAAGGATTATTATGTGCAAGTTGATACAGGGAGTGACATTCTATGGGTGAATTGTGTTGAGTGCTCGAAATGTCCCAGGAAAAGTGATCTTGGTATAGAGTTGACTCTCTATGACCCGAAGGGCTCCGAAACTTCAGACTTGATTTCTTGTGACCAAGATTTTTGCTCTGCCACGTATGATGGTCCGATTCCTGGTTGCAAGTCTGAAATTCCGTGCCCCTACAGCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTAAAGGATTATCTTACTTATAACCGTGTCAATGGCAATCTTCGTACTGCAACACAAAATAGCAGCATCATTTTTGGGTGCGGTGCAGTACAATCTGGCACATTGGCTTCATCTAGTGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAAGCAAATTCTTCGGTGCTTTCACAGCTTGCTGCATCTGGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAAGTGGTGGAACCAAAAGTCAGCACAACTCCATTGGTACCAAAAATGGCACACTACAATGTGGTTTTGAAAAATATTGAGGTTGATACAGATATTCTACAGCTTCCCTCAGATGTATTTGATTCTGGAAATGTGAAGGGGACAGTAATAGATAGTGGAACAACCTTGGCTTATCTTCCTGACATAGTTTATGACCAACTGATTCCAAAGGTTTTGGCCGGGCAGCCTGGACTGAAATTATATACTGTTGAGCCACAATTTAGTTGTTTTCAGTATACTGGAAATGTTGATCACGGATTTCCAGTTGTCAAGCTTCATTTTGAGGATTCTCTTACTCTGACAGTCTATCCTCACGACTACTTGTTCCAGTTTAGAGATGGTATCTGGTGTATTGGCTGGCAGAAAAGTGTGGCAGAAACGAAGAATGGAAAGGACATGACCCTTCTTGGAGATTTGGTGCTATCAAACAAACTAGTCTTGTATGATCTTGAAAATATGGCCATTGGATGGACCGACTACAATTGCTCTTCCAGCATTAAAGTGAAGGATGAAACAACTGGAGTAGTACATACAGTTTCTGCTGACAATAAGTGCCTCGTGGCAATGGAAGGATCCCAACCTCTTGCTCCTTCTACACAAGAAGAGCACACATCCAATGACGAGAGAAGGGTAAATTTTCCATTTGATCTTAATGAAAAAATTGATGAAGAAGTGTTAATTTCTTACTCCGAGGAATCAAGTGCAAAAGTTGGTCTTGGGTGTGATGAAATGAGACCCACAACTTCCCAAGAGAATAAGTCTGCATCATGTGATGACAACATTTTAGATGTTCCTCCTACCAATGCTTCCAGCAATGACAATGAAGATAGAGCCAGTGTTGCTGATGGAGAATCTACTTCTGAAAGCAGAAAACGAAAGAGAGTCGATGAAGAGGACTGTGATGAAAAAGTGTCTTGGAGGGCTTTTCGTGGAGAAACAATAGCAGTGGAAATTGAGAGTCAAAAAGTGACCATAGTGGATGATGGTTATCGTTGGCGCAAGGCATACTACAGATGCACAAGTGCTGGATGTTCAGTAAGGAAGCATGTGGAAAGGAATACATTCAATCCAAAAAATGTGATTACTACATATGAGGGAAGACACATTCATCAAGTTCCATCCCCTAGGAACATCAGAAAATTCAAAGATGATGCAGAAGATCCCCGTGAAGAACTTGCTACAGCAACAGCAAACGCTGTAAGGACTTTTGGATTACCAGGGATTGGGAATCATCGAAACACCCCAAATGCAGAACCTCAAATTCACTCGCTGGGAACTCGTAATCTCACGAATAATACTGAGTTTGCCAATAGGTTTATGAGCCCTAACCGTTTTTGTAGTTTCAACAACATGGACATTGCCTCTTCCTCCACCTCTCAAAGGCATTTTTCTTCCTTGAAAAATACTTACAGCATGTCTTATCACACTTATGGACTTCACATTGACCGTTATGCTACAATGTTTCCTGAATCTCCGACATCACCATCACCTTTTAACGTTCCTTCTTCCGGAGTTTTTCCTCAGGCCAGGCGTAATTCTGATGTGTCCAGTTCAGTGTTTATTCCTTACAGGGGAACAGGTGTAAGAGACAGATACTAA 2400 0.4267 MDPRGLAMLVAILVAEIGLVANGNLVFPVERRRRSLSAIRAHDARRRGRILSAVDLNLGGNGIPTETGLYFTKLGLGSPPKDYYVQVDTGSDILWVNCVECSKCPRKSDLGIELTLYDPKGSETSDLISCDQDFCSATYDGPIPGCKSEIPCPYSITYGDGSATTGYYVKDYLTYNRVNGNLRTATQNSSIIFGCGAVQSGTLASSSEEALDGIIGFGQANSSVLSQLAASGKVKKIFSHCLDNIRGGGIFAIGEVVEPKVSTTPLVPKMAHYNVVLKNIEVDTDILQLPSDVFDSGNVKGTVIDSGTTLAYLPDIVYDQLIPKVLAGQPGLKLYTVEPQFSCFQYTGNVDHGFPVVKLHFEDSLTLTVYPHDYLFQFRDGIWCIGWQKSVAETKNGKDMTLLGDLVLSNKLVLYDLENMAIGWTDYNCSSSIKVKDETTGVVHTVSADNKCLVAMEGSQPLAPSTQEEHTSNDERRVNFPFDLNEKIDEEVLISYSEESSAKVGLGCDEMRPTTSQENKSASCDDNILDVPPTNASSNDNEDRASVADGESTSESRKRKRVDEEDCDEKVSWRAFRGETIAVEIESQKVTIVDDGYRWRKAYYRCTSAGCSVRKHVERNTFNPKNVITTYEGRHIHQVPSPRNIRKFKDDAEDPREELATATANAVRTFGLPGIGNHRNTPNAEPQIHSLGTRNLTNNTEFANRFMSPNRFCSFNNMDIASSSTSQRHFSSLKNTYSMSYHTYGLHIDRYATMFPESPTSPSPFNVPSSGVFPQARRNSDVSSSVFIPYRGTGVRDRY 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01642 799 CDD pepsin_A_like_plant 70 429 IPR034161 -
Cca02g01642 799 Pfam WRKY DNA -binding domain 600 638 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g01642 799 Gene3D Acid Proteases 61 255 IPR021109 -
Cca02g01642 799 PRINTS Pepsin (A1) aspartic protease family signature 76 96 IPR001461 GO:0004190|GO:0006508
Cca02g01642 799 PRINTS Pepsin (A1) aspartic protease family signature 302 313 IPR001461 GO:0004190|GO:0006508
Cca02g01642 799 PRINTS Pepsin (A1) aspartic protease family signature 401 416 IPR001461 GO:0004190|GO:0006508
Cca02g01642 799 SUPERFAMILY Acid proteases 64 433 IPR021109 -
Cca02g01642 799 MobiDBLite consensus disorder prediction 544 564 - -
Cca02g01642 799 PANTHER ASPARTYL PROTEASES 9 446 IPR001461 GO:0004190|GO:0006508
Cca02g01642 799 Gene3D WRKY domain 578 641 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca02g01642 799 Pfam Xylanase inhibitor N-terminal 70 254 IPR032861 -
Cca02g01642 799 MobiDBLite consensus disorder prediction 507 564 - -
Cca02g01642 799 Pfam Xylanase inhibitor C-terminal 272 425 IPR032799 -
Cca02g01642 799 Gene3D Acid Proteases 256 435 IPR021109 -
Cca02g01642 799 SUPERFAMILY WRKY DNA-binding domain 589 640 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca02g01642 799 ProSiteProfiles WRKY domain profile. 588 640 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g01642 799 ProSiteProfiles Peptidase family A1 domain profile. 70 425 IPR033121 -
Cca02g01642 799 MobiDBLite consensus disorder prediction 512 543 - -
Cca02g01642 799 SMART WRKY_cls 593 639 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g01642 799 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01642 Cca-Chr2 35229251 35247044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01642 52 430 Miscellaneous Gene Families AT1G44130 26.601 1.46e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca02g01642 TAXi_N 3.8e-39 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01642 - - gmx:100804123 843.958