Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01641 ATGgttgaagtggaagtggtggtggaggatgaagatgaagttgTGGTTATTCCAAGCAACTTTTCAATGGTTGAGGACGGAATATATCGCTCTAGTTTCCCTCGATCTTCCAATTTCTCTTTTCTTGAAACCCTGAATCTTCGATCCATCGTATACTTGTGCCCCGAACCCTATCCGCAACATAATTTAGAGTTTCTTGAATCACAAAATATTCGGCTCTTTCACTTTGGTATTCAAGGCAAGACGGATCTTACTGTCTCCACTGTGAGGGATACTATTTTGAAGGCTGTCAAGGTTTTAATTGATGTGACAAATCACCCGGTTTTAATCCACTGTAACCAAGGAAAGCATCGAACTGGTTGCGTTGTTGGTTGCCTGAGAAAGTTGCAGAATTGGTGTTTAGCTTCAGTGTCTGAGGAGTACAAGAAATTTGCTGGTGCTAAATCCAGGACAACAGATTTAAGGTTCATAGAAACATTTGACGTATTAACCCTGAGACAGAGTCTTAACACCATCATCTACCAGTACCTAGCTTCACAGAAGCTGAGATTGATGTACATAGATGAGAATTCACAGAAGTCCCAGTTGACATAA 594 0.3788 MVEVEVVVEDEDEVVVIPSNFSMVEDGIYRSSFPRSSNFSFLETLNLRSIVYLCPEPYPQHNLEFLESQNIRLFHFGIQGKTDLTVSTVRDTILKAVKVLIDVTNHPVLIHCNQGKHRTGCVVGCLRKLQNWCLASVSEEYKKFAGAKSRTTDLRFIETFDVLTLRQSLNTIIYQYLASQKLRLMYIDENSQKSQLT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01641 197 Gene3D Protein tyrosine phosphatase superfamily 15 164 IPR029021 -
Cca02g01641 197 PRINTS Plant and fungal dual specificity phosphatase signature 15 32 IPR020428 GO:0016791
Cca02g01641 197 PRINTS Plant and fungal dual specificity phosphatase signature 52 65 IPR020428 GO:0016791
Cca02g01641 197 PRINTS Plant and fungal dual specificity phosphatase signature 71 85 IPR020428 GO:0016791
Cca02g01641 197 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Cca02g01641 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 182 - -
Cca02g01641 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 20 175 IPR020422 GO:0006470|GO:0008138
Cca02g01641 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 182 - -
Cca02g01641 197 Pfam Tyrosine phosphatase family 15 170 IPR004861 -
Cca02g01641 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 110 120 IPR016130 GO:0016311|GO:0016791
Cca02g01641 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 162 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01641 Cca-Chr2 35218845 35220171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01641 6 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.105 1.93e-88 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01641 K18045 - gmx:100808199 314.309