Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01640 ATGGAGAAGAAGCTCAACCTCATCGTCCCTAATCCTCATGAAACATTTCCGCGCCGCGATTCCCCTATACCTCAAGATTCACCGTGGATGGTGAAATTCAGCTCTGGTGAAACTATGGATTCGGGAACTTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATTAGAACGGGCGTTTGTAGATTTGGCGCAACGTGTCGGTTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATTGGCGAGTTTCCAGAAAGAATAGGGCAGCCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAATAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCTAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACTGTCCATTCTCCAACTACGCCAGGTCAGCAGTCATATGCTGGAGGAATTACAAATTGGTCCAGGGCATCATATATTCCTAGTCCTCGATGGCAAAGTCCGTCAAGTTATGCACCCTTAATTCTGCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATATCTACTTCAGACAGTCCACAACAAGCAATGAGAAATGGTCAAACATTTGGAACTTCTCGCCAAGGTGAGCTAGCAAATGCAGGATCACCACATGGGGCATATTCTCAATTCCGTTCTAGCACCGTTCCAGTTGGTTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTCGGTGCAGTCTGTCGATTCCACCACCCACGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCGCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCCCTGCATCGCCTTCAGCTGATGCCCCAAGCAGGCATCTGTTAGGATCTTCATCGGGAACTGCTGCATTAAATTTATCTTCGGAGGGACATGTTGAGTCAAGCTCAGGCAGACGGCTTTCGTTATCAGAGACGGGACAGATTCCTTCTGGTGATAATGACATTGATGATGATGTCTCTTGA 1320 0.4606 MEKKLNLIVPNPHETFPRRDSPIPQDSPWMVKFSSGETMDSGTYPERPGEPDCSYYIRTGVCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGIVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQQSYAGGITNWSRASYIPSPRWQSPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTFGTSRQGELANAGSPHGAYSQFRSSTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNIPASPSADAPSRHLLGSSSGTAALNLSSEGHVESSSGRRLSLSETGQIPSGDNDIDDDVS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01640 439 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Cca02g01640 439 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Cca02g01640 439 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Cca02g01640 439 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Cca02g01640 439 Gene3D - 46 124 - -
Cca02g01640 439 Gene3D - 299 378 - -
Cca02g01640 439 PANTHER PROTEIN PHOSPHATASE RELATED 22 436 - -
Cca02g01640 439 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Cca02g01640 439 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Cca02g01640 439 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Cca02g01640 439 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Cca02g01640 439 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Cca02g01640 439 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Cca02g01640 439 SUPERFAMILY CCCH zinc finger 349 373 IPR036855 GO:0046872
Cca02g01640 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 373 IPR000571 GO:0046872
Cca02g01640 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Cca02g01640 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Cca02g01640 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Cca02g01640 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Cca02g01640 439 MobiDBLite consensus disorder prediction 405 439 - -
Cca02g01640 439 MobiDBLite consensus disorder prediction 405 429 - -
Cca02g01640 439 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Cca02g01640 439 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Cca02g01640 439 SUPERFAMILY CCCH zinc finger 304 330 IPR036855 GO:0046872
Cca02g01640 439 Gene3D - 125 172 - -
Cca02g01640 439 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872
Cca02g01640 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 22 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01640 Cca-Chr2 35197005 35203002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01640 29 438 C2H2 Transcription Factor Family AT3G02830 59.952 1.22e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g01640 zf-CCCH 5.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01640 - - ccaj:109816515 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01640 02 35197005 35203002 Cca02g01640 02 35197005 35203002 ECH