Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01627 ATGAATTGCTTCCCTTGTTGTGGCCAAAAGAAAAGTCAAAGTAAGAGGGAGCATGGTTCACCCCCACCCGAACCTGAAAACATGCCAGCAAAAGCACCAGAAATGAAGAAACAAAAACCGGACGAGCTCGTCCCAGCGGAATCTGTGAATATTAAAGTACAGAGTTACACTTTCCGTGAGCTTGCCACAGCAACAAAGAACTTCCGTCAGGATTGCCTCATCGATGAAGGAGGATTCGGCAGAATATACAAAGGGATAATTCCTGCCACAGGCCAGGTTGTGGCCGTGAAGCAACTCGACCGCAAAGGGATGCAAAATGGTAATGAATTTCTGAGCGAGGTTGCGGAGCTAAGTCTCTTGCACCATGAAAATCTGGTCAATCTCATTGGTTATTGTGCCGATGGTGATCAACGTCTTTTGGTTTACGAGTTATTTGATGGGCGCACACTAGAAAATCGTCTCTTTGAGAACAAAGCGGATGAAGGTCCATTAAACTGGTATGACAGAATGAAAATAGCAGCGGCTGCTTCTAAAGGACTGGAGTACTTGCATGAGAGTGTGAACCCCCCAATTATATTCCGTGACCTGAAAGCGTCCAACATCTTGGTGGACAATGATTTCAATGCTAGACTACGTGATTTTGAAATGAGCAAACTTTCTGGTGGAGACAAGATGCATAATGCACCTCCAAGGCTTATGGGTACCTATGGTTACTGCGCTCCAGAGTATGGAAGAGCAGGTCAACTCACCATGAAATCAGACGTATACAGTTTCGGAGTTGTCATCCTAGAGCTCATCACTGGACGAAGAGCCATTGACACCACAAGACCAAACGAAGAGCAAAACCTAGTTTCATGGGCACAACCGATATTCAGGGATCCTAAAAGATATCCAGACATGGCAGACCCGGTTCTTGGCAAGAATTTCCCAGAAAAAGATCTGAATCAAGTTGTTGCAATAGCATCGATGTGCTTACAGGAGGAAGCAGACGCTCGTCCTTTGATCAGTGACGTTGTAACTGCTCTCAGTTTTCTTTCCACGGCTCCTGTTACTGTCCCTAGCAAGAAAGCTGAGAGTGAGACTGAAGTAAAACCTAGCAAGGCAAAATCAAGAAGCAGAAGCAGCTCCAGATCAAGGAAGGGGTCAGTTTCAGATTCAGGAGGTGACGGAAGCGTTTCTACGATCGGGAAAACCAGCAGGAAGAGCAGCAAAAAATCTTCTGACAAAGAACTAAGCCAGAAGAGCAGCAAGAAGTCTTCTAAAGATCCAAGCCAGAAGAGCAGCAGAAAATCATCGATCAAAGATTTGAGCAAAAAGCTAAGCAGTAGAAAATCTTCTGCGAGAGTTTCGAGCCGCAACAGCAGCATTACATCGGAGGAAGGAAGCATGTCCTCAAGCTGCCGTAGCAGCAGTGTGGTATCTGAGGATGAAGGTGTTATGTCTCAGCATAGCAGCATGAGATCACAATCACGCGGGAACGTTTCTTTTGGCCTTACCAGCAGCAGAAGGTCAGAGAGCGTGCGTTCTGGAAGCAGCTACGGTTCTGATGAGGGAAGCCTTCACTCACAATAA 1572 0.4618 MNCFPCCGQKKSQSKREHGSPPPEPENMPAKAPEMKKQKPDELVPAESVNIKVQSYTFRELATATKNFRQDCLIDEGGFGRIYKGIIPATGQVVAVKQLDRKGMQNGNEFLSEVAELSLLHHENLVNLIGYCADGDQRLLVYELFDGRTLENRLFENKADEGPLNWYDRMKIAAAASKGLEYLHESVNPPIIFRDLKASNILVDNDFNARLRDFEMSKLSGGDKMHNAPPRLMGTYGYCAPEYGRAGQLTMKSDVYSFGVVILELITGRRAIDTTRPNEEQNLVSWAQPIFRDPKRYPDMADPVLGKNFPEKDLNQVVAIASMCLQEEADARPLISDVVTALSFLSTAPVTVPSKKAESETEVKPSKAKSRSRSSSRSRKGSVSDSGGDGSVSTIGKTSRKSSKKSSDKELSQKSSKKSSKDPSQKSSRKSSIKDLSKKLSSRKSSARVSSRNSSITSEEGSMSSSCRSSSVVSEDEGVMSQHSSMRSQSRGNVSFGLTSSRRSESVRSGSSYGSDEGSLHSQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01627 523 ProSiteProfiles Protein kinase domain profile. 68 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01627 523 PANTHER RECEPTOR-LIKE KINASE LIP1 1 432 - -
Cca02g01627 523 MobiDBLite consensus disorder prediction 401 442 - -
Cca02g01627 523 MobiDBLite consensus disorder prediction 377 400 - -
Cca02g01627 523 Gene3D Transferase(Phosphotransferase) domain 1 146 348 - -
Cca02g01627 523 SMART serkin_6 68 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01627 523 PANTHER OS07G0668900 PROTEIN 1 432 - -
Cca02g01627 523 MobiDBLite consensus disorder prediction 351 523 - -
Cca02g01627 523 Pfam Protein kinase domain 74 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01627 523 MobiDBLite consensus disorder prediction 1 43 - -
Cca02g01627 523 Gene3D Phosphorylase Kinase; domain 1 30 144 - -
Cca02g01627 523 SUPERFAMILY Protein kinase-like (PK-like) 46 345 IPR011009 -
Cca02g01627 523 MobiDBLite consensus disorder prediction 443 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01627 Cca-Chr2 35071177 35074744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01627 1 384 Glycoside Hydrolase AT3G07070 55.774 1.32e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca02g01627 Pkinase 3.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01627 - - pvu:PHAVU_007G115500g 594.734