Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01625 ATGGACGACGCTGCTTCAGCTTTGTTCAAACTGTGTTTGGCCTATGAGAATAAAGCGAGGACTGTGAGAGAGGGTGCAGTGCAGGTTATTCTTGGAAAGATCGTTGACAAGGTTATGGTTGATGAGTTGGTGTCACTACTTGCGTTGCTTGCTAAGCATTCCAAGGCTGTTGAGGCGTTGGTGAGTCATGGTGCTGTACCCTACTTGCTTAATATAGTCAAGGAAACCACGTCGGAACGCGTCAAGAAAAACTGCATTGGGATTCTGTGCACGGTGTGTTGCAATCATAGAGAGAAAAGGAGCGAAATTAGAGAGAATGAAATGGCTTACTGA 333 0.4565 MDDAASALFKLCLAYENKARTVREGAVQVILGKIVDKVMVDELVSLLALLAKHSKAVEALVSHGAVPYLLNIVKETTSERVKKNCIGILCTVCCNHREKRSEIRENEMAY 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01625 110 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 1 109 - -
Cca02g01625 110 PANTHER U BOX DOMAIN-CONTAINING 1 109 - -
Cca02g01625 110 SUPERFAMILY ARM repeat 4 105 IPR016024 -
Cca02g01625 110 Gene3D - 1 109 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01625 Cca-Chr2 35055139 35055471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01625 3 110 U-box Gene Family AT3G07360 48.148 8.92e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01625 - - ccaj:109816306 165.236