Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01619 ATGCTTTTTGCCGATGCAGAAGCGATTCACCTTTTGCTGAGTCCGTTATCCCCCGGCACGCCTTCCGTGGAGCTCGAGCTCCACGAGGACTTGATCACAACTCTCCTAAACCTCTCAATTCACGACGACAACAAAAGAGCGTTAGCTAAAAACGAAAAAGTGGTTTCCCTGATTGTTGATTCGTTGAAAATGGGAACAGTCCAAACAAGAAGCAATGCAACTGCAGAGGTGTTTTCAATGTCATCTATTTACTCAAACAGACACATACTTGGAAAATCTGAAGCTATAAAGTATCTAGTGGACTTGCTAGACGAGGGGCATCCTTTAAGCATGAATGACGCTGCTTCAGCTTTGTTCAAATTGTGTTTGGCCTGTGAGAATAAAGCGAGGACTGTGAGAGAGGGTGCAGTGCAGGTTATTCTTGGAAAGATTGTTGACAAGGTCATGGTTGATGAGTTGGTGTCACTACTTGTGTTGCTCGCTAAGCATTCCAAGGCTGTTGAGGCATTGGTGAGTCATGGTGTTGTACTCTACTTGCTTGATATCGTCAAGGAAACCACGTCAGAACGCGTCAAGGAAAATTGTGTTGGGATTCTGTGCACGCAAGTCCTCTCTCACTGCATCCTCACTCCGAATTGCTTGCTCCAAGGCATGATTTGCAAGTGGTGCAAAGACCACAATGTTGACCCATCAAAGCCGTTTGGGATGAAATCCACGACGACCGAGTCACCAACGCACACAGACACCGTATGCGTTCCTTACTCTACAAGCTCTTTCTCTCCCTTCCCGAGCAAAAAAAAAGTCGTAAAAGACCTTTGCTAG 822 0.4599 MLFADAEAIHLLLSPLSPGTPSVELELHEDLITTLLNLSIHDDNKRALAKNEKVVSLIVDSLKMGTVQTRSNATAEVFSMSSIYSNRHILGKSEAIKYLVDLLDEGHPLSMNDAASALFKLCLACENKARTVREGAVQVILGKIVDKVMVDELVSLLVLLAKHSKAVEALVSHGVVLYLLDIVKETTSERVKENCVGILCTQVLSHCILTPNCLLQGMICKWCKDHNVDPSKPFGMKSTTTESPTHTDTVCVPYSTSSFSPFPSKKKVVKDLC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01619 273 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 201 239 - -
Cca02g01619 273 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 200 - -
Cca02g01619 273 PANTHER U BOX DOMAIN-CONTAINING 201 239 - -
Cca02g01619 273 PANTHER U BOX DOMAIN-CONTAINING 5 200 - -
Cca02g01619 273 Gene3D - 1 224 IPR011989 -
Cca02g01619 273 SUPERFAMILY ARM repeat 3 203 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01619 Cca-Chr2 34987779 34988783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01619 2 201 U-box Gene Family AT3G07360 47.525 1.37e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01619 - - ccaj:109816306 382.104