Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01617 ATGGCTTCTCTCTCTTGCTCCCCCAACGACCTCGCGCCACTCATCAACCAAAGTACCGCCGCCGCCACCTACCTCTGCGCCCAGTTCGACGCCATTTCCAAGAAGCTCGTGGAAACCACCTACGCCGTCGACAACACCTACCTTCTCTTCTCAGCATACTTGGTCTTCGCCATGCAGCTAGGTTTCGCCATGCTCTGCGCCGGTTCCGTCCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCGGCCGCCGGCGGCCTCTCCTACTACCTCTTCGGCTTCGCATTCGCCTTCGGCACCGGCACCGGCACCCCCTCCAGCGGCTTCATCGGGAAACACTCCTTCGCCCTACGAGACTACCCCTCCCCCTCCGCCGACTACAGCTTCTTCCTCTACCATTGGGCCTTCGCCATCGCCGCCGCCGGCATCGCCAGCGGCTCCATCGCCGAACGCACCCAATTCGTCGCCTATCTCATCTACTCCTCCTTCTTAACCGGCTTTGTCTACCCCGTCGTCTCTCATTGGTTCTGGTCCTCCGACGGTTGGGCCAGCCCGACGCTAAGCCATGGAACCGTCTTATTCAGGTCCGGAGTCATCGACTTCGCGGGCTCGGGAGTGGTCCATATGGTTGGCGGCATAGCGGGCCTGTGGGGGGCTTTTATCGAAGGCCCAAGAGTCGGCCGGTTCGACCGAACCGGCCGCTCCGTTGCGCTACGAGGCCACAGCGCTTCCCTCGTTGTGCTTGGTTCGTTTCTGTTATGGTTCGGCTGGTACGGGTTTAACCCCGGTTCGTTTATAACTATAGCCAAGGGGTATGGCGGGGGGTATTACGGTCAATGGAGCGCGATAGGGAGGACAGCTGTAACGACGACATTGGCTGGGAGCACTGCGGCTCTGACTACTCTTTTCAGCAAGCGCTTATTAGTGGGCCATTGGAACGTCATTGACGTCTGTAACGGCCTCCTTGGGGGGTTCGCCGCCATCACCTCCGGCTGCGCCGTTGTGGAACCCTGGGCCGCGATTGTCTGTGGCTTTGTGGCCGCTTGGGTTTTGATTGGCCTTAATAAGGTTGCCGCCAAGGTGGAGTACGATGACCCCTTGGAGGCGGCGCAGCTTCACGGCGGCTGCGGCGCGTGGGGGGTCTTGTTCACGGGGCTGTTTGCGAAGGGGGAGTACGTGGAGGAGATTTACGGCGTTGGGCGGCCGTGCGGGGCGTTGATGGGCGGAGGATGGCGGCTGCTGGCGGCGCAGGTGGTTCAGATATTGGTGGTGTGTGGTTGGGTTACGGCCACCATGGCGCCGTTGTTCTACGGGCTTCATAAGATGAATTTGTTGAGGATTTCGAGGGAGGATGAGACTGCGGGGATGGATTTAACTCGGCATGGTGGGTTTGCTTATGCGTATCATGATGATGAGGATGGTTCCAGCGCCGGAGTGGGACTCATGATGCGGAAAATAGAGCCCGCTAGTTCATCTCCCTCTCCCACCGCTCAACCACAAGTGTGA 1518 0.5975 MASLSCSPNDLAPLINQSTAAATYLCAQFDAISKKLVETTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGTGTGTPSSGFIGKHSFALRDYPSPSADYSFFLYHWAFAIAAAGIASGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSSDGWASPTLSHGTVLFRSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRVGRFDRTGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFITIAKGYGGGYYGQWSAIGRTAVTTTLAGSTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAIVCGFVAAWVLIGLNKVAAKVEYDDPLEAAQLHGGCGAWGVLFTGLFAKGEYVEEIYGVGRPCGALMGGGWRLLAAQVVQILVVCGWVTATMAPLFYGLHKMNLLRISREDETAGMDLTRHGGFAYAYHDDEDGSSAGVGLMMRKIEPASSSPSPTAQPQV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01617 505 Pfam Ammonium Transporter Family 47 470 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca02g01617 505 Gene3D Ammonium transporter AmtB like domains 21 486 IPR029020 -
Cca02g01617 505 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca02g01617 505 SUPERFAMILY Ammonium transporter 41 451 - -
Cca02g01617 505 TIGRFAM amt: ammonium transporter 44 470 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca02g01617 505 PANTHER AMMONIUM TRANSPORTER 1 501 - -
Cca02g01617 505 PANTHER AMMONIUM TRANSPORTER 1 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01617 Cca-Chr2 34962051 34964002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01617 23 505 Inorganic Solute Cotransporters AT1G64780 78.074 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01617 K03320 K07573 gmx:100797209 854.358