Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01613 ATGGAAAttcttcttctttttttcttcttgctgcttTGTTATCTTGTTGCCTTTGCTTCCGCCACCGATGTTGAATTTGACAACTGCAACTGCGATGACGGGGAAGGGATTTGGAGCATACATAGCATACTCGTTGGCCAAAAAGTCAGCGACTTTTTCATTGCCGTTGCGTATTTCTCCATACCCATTGAACTCCTTTACTTTGTTAGCCGTTCAAACGTTCCATTCAAATTGCTCTTCCTTCAATTTATCGCCTTCATAGTGCTGTGTGGCTTGACCCATTTGCTCAATGCTTATTCTTATCACGGCGCTCCCTCCTTCCAGTTGTTGCTTTCCCTAACCGTTGCTAAGTTCCTCACTGCTCTTGTTTCCTGTGCAACTGCTTTGACCCTTCCCCCTCTCATCCCTCTTCTCCTCAAAATCAAGGTCAGGGAGCTCTTCCTGAGGCAGAATGTGATGGAGTTGGGTCAAGAGGTTGGGATGATGAAGAAACAGGAGGAGGCAAGCTGGCATGTTAGGATGCTCACTAGGGAAATTAGGAAGTCTCTTGACAAGCACACCATCTTGTACACCACCCTTGTTGAGCTTTCCAAGGCGTTGAAGTTGCATAATTGTGCAGTTTGGATGCCCAACGAGGACCGGCGAGAGATGCACTTGACCCATGAATTGAAAACAAACTCTGCCAAGAATTTTCCGACTTTCATTCCTGTGAATGATCCAGATGTATTGGAGATAAGAAAAACTAAGGGGGTGAGGATTTTGAGGCCTGATTCCGCTCTAGGGGCTGCAAGTAGTGGTGGGTCTGGGGAGTTGGGTGCTGTGGCAGCTATTCGTATGCCGTTACTTCATGTGTCGAATTTCAAAGGAGGGACTCCGGAGTTGGTTGAAACTTGTTATGCTATACTGGTTTTGGTTCTTCCAAGTTCAAGCTCAAGGGCTTGGACGTGTCATGAGATGGAGATAGTTGAAGTGGTTGCTGATCAGGTGGCTGTTGCCCTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTGATGAGACAGAAGCTGGAAGAGAGGAACCGGGCATTGCAACAGGCTCAAAAGAACGCAATGATGGCCAGCGAGGCAAGGAAGTCGTTTCAGAAGGTGATGAGCCATGGAATGCGGAGGCCTATGCATTCTGTTCTGGGGATGCTTTCATTGTTTCAGGAGGATAATTTGAGATCTGAGCAGAAGATTATTGGTGATACAATGTTGAAAGTTGGCTATGTGATCTCGAGTTTGATTAATGATGTAATGGAGATTTCAGAAAATGAAAAGGGAGGCTTCCGGTTAGAGATGAAGCCTTTCCTTCTGCATTCAATGATGAGGGAAGCTGCTTGCATTGCCAAGTGCCTGTGTGTTTATGAAGGCTTTGGTTTTGAAATTGATGTCCAGAAGTCTTTGCCTGAAGCAGTTATGGGTGATGAGGCAAGGACTTTTCAAGTAATTTTGCACATGATTGGCTATTTATTGAACATGAACAACAAAGGGATCCTTAATTTTCGAGTTTTTCTTGAAAATGATGGTGGAGATAAGGATGATAAAAGTTTTGGAATGTGGAGATCAAGCGGTCAGAACGAGTATGTACATATAAAATTTGATTTTCAGATTACTGATAGGCCTCGGCAAGATGAAGCAACTTCAACAGCACATTATAGCCGTAGGAGGCAGTACTACAACAATGAACTTAAGGAGGGCCTAAACTTCAGCATGTGCAAGAAGTTAGTACAGATGATGCAAGGTAATATATGGATATCACCAAACTCCCTGGGTTTGGTGCAAGGCATGACTCTTCTTCTAAAGTTTCAGATAGGACCAGCATCACTTGAAAAATCAATATTTGCATCTAAAGATTATTCAAATTCACAGTTGAGAGGCATAAAGGTTGTGTTAGCCGATGATGATGGTGTGAACAGGACCGTGACCAAGAAGCTACTTGAGAAGCTTGGTTGTCAAGTAACTGCTGTTTCATCAGGGTTTGAGTGCCTGAGTGCTGTAAGTGGCTCTGGTAACTCATTCCGAATCATCCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTGGCAAAGAGGATCCGCAAGTTCCATAGCCGTAGTTGGCCCTTGATTGTAGCTCTTATAGCAAGTGCAGAAGAACATGTGAGGGAGAAATGCCTCCTTGCGGGAATGAATGGAATCATCCAAAAACCTATCCTACTTCATCAGATAGCAGATGAACTTAGAACAGTCCTACAAAGAGCAGtatacctgcttgagagtacactcgtagtcttctggggtgtaggagggccgaacgagagctttagGAATAAACAAGAAAGGCGCATGGATTGGGCAAATGGAGCGAGAATGAGTGGTGAAGTCGAAGCAGAAGCAGAATACTTCTGCAAGGACTTCGAGTGGGAAGACCTAAGATCAGAGGTGGAAGCAAACCCTTGCTTTTCCTACCACTTCCAATCCGCTCCTTCATCGTCGTCGCCGTCGCCACAATCCGACGTCCAAGCATGGAAGCAATTTCACCTCCGTCATTCCTCCGGAAAATTCTTCAAGGAGAGACGCTATTTGTTGAAAGAGTTCCCCGAACTACTTTCCTGTCCCCCAAACTCTAAGCTCTTGGAAATTGGTTGCGGCAATGCCAGCACTGCTCTTCCTATTCTACGGGCCAACAAAGATGTGATTGTTTATGCATGCGACTGTAGTGACGAGACTCTTGAGAGGGCTAAAGAGATTGTAAGTGGTGCCACCACAGTTGCTTCCATTCACCATCGTTTCCGTACATTCTGTTGTGACCTTTCCACTAATGGATTCCCATATTGGCTGGCATGCAACTCTTGCCGAGATCAATTCTCACAAAAGCAGTCACAATGCTTGTCAGGTGTCAGAGAGAATAATGGACTGCATTCTACCAATCCCTATCCGTCCGAAGAGTTTGGCTGTTGTGTTGGCGGAGTAGATTTTGTAACGCTGGTATTCACTTTATCAGCTGTACCTCCGGAAAGGATGCCAAAGTCTATCAAGGAATGTTTTGTTGTGTTAAAGCCAGGAGGCATGGTTTTTTTTAGGGACTACGGCCTCTATGATATGACCATGCTTCGATTTGAGCCTGATAAGCGAGTGGGATTCAGGGAATACATGCGGTCTGATGGAACGCGATCATATTTCTTTTGTTTGGATACTGTACGGAGCCTATTTTTGGGTGCAGGCTTCACCGAGCTTGAGCTTGATTATTGTTGTGTGAAGTCTGTAAATCGTCAGAAAGGGAAGTGCATGCGAAGAGTGTGGGTTCACGGGAAGTTCCAGAAACCTGCGCTTGGTTGTCAATAA 3351 0.4381 MEILLLFFFLLLCYLVAFASATDVEFDNCNCDDGEGIWSIHSILVGQKVSDFFIAVAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGLTHLLNAYSYHGAPSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLKIKVRELFLRQNVMELGQEVGMMKKQEEASWHVRMLTREIRKSLDKHTILYTTLVELSKALKLHNCAVWMPNEDRREMHLTHELKTNSAKNFPTFIPVNDPDVLEIRKTKGVRILRPDSALGAASSGGSGELGAVAAIRMPLLHVSNFKGGTPELVETCYAILVLVLPSSSSRAWTCHEMEIVEVVADQVAVALSHASVLEESQLMRQKLEERNRALQQAQKNAMMASEARKSFQKVMSHGMRRPMHSVLGMLSLFQEDNLRSEQKIIGDTMLKVGYVISSLINDVMEISENEKGGFRLEMKPFLLHSMMREAACIAKCLCVYEGFGFEIDVQKSLPEAVMGDEARTFQVILHMIGYLLNMNNKGILNFRVFLENDGGDKDDKSFGMWRSSGQNEYVHIKFDFQITDRPRQDEATSTAHYSRRRQYYNNELKEGLNFSMCKKLVQMMQGNIWISPNSLGLVQGMTLLLKFQIGPASLEKSIFASKDYSNSQLRGIKVVLADDDGVNRTVTKKLLEKLGCQVTAVSSGFECLSAVSGSGNSFRIILLDLHMPEMDGFEVAKRIRKFHSRSWPLIVALIASAEEHVREKCLLAGMNGIIQKPILLHQIADELRTVLQRAVYLLESTLVVFWGVGGPNESFRNKQERRMDWANGARMSGEVEAEAEYFCKDFEWEDLRSEVEANPCFSYHFQSAPSSSSPSPQSDVQAWKQFHLRHSSGKFFKERRYLLKEFPELLSCPPNSKLLEIGCGNASTALPILRANKDVIVYACDCSDETLERAKEIVSGATTVASIHHRFRTFCCDLSTNGFPYWLACNSCRDQFSQKQSQCLSGVRENNGLHSTNPYPSEEFGCCVGGVDFVTLVFTLSAVPPERMPKSIKECFVVLKPGGMVFFRDYGLYDMTMLRFEPDKRVGFREYMRSDGTRSYFFCLDTVRSLFLGAGFTELELDYCCVKSVNRQKGKCMRRVWVHGKFQKPALGCQ 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01613 1116 Gene3D - 335 432 - -
Cca02g01613 1116 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
Cca02g01613 1116 Pfam GAF domain 186 333 IPR003018 GO:0005515
Cca02g01613 1116 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 753 - -
Cca02g01613 1116 SMART REC_2 634 749 IPR001789 GO:0000160
Cca02g01613 1116 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Cca02g01613 1116 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Cca02g01613 1116 SUPERFAMILY CheY-like 631 755 IPR011006 -
Cca02g01613 1116 Gene3D - 433 612 IPR036890 -
Cca02g01613 1116 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Cca02g01613 1116 CDD AdoMet_MTases 879 1029 - -
Cca02g01613 1116 Pfam Methyltransferase domain 859 1081 - -
Cca02g01613 1116 Pfam Response regulator receiver domain 636 747 IPR001789 GO:0000160
Cca02g01613 1116 Coils Coil 339 369 - -
Cca02g01613 1116 PANTHER ETHYLENE RECEPTOR 5 753 - -
Cca02g01613 1116 CDD REC_ETR-like 634 749 - -
Cca02g01613 1116 SUPERFAMILY GAF domain-like 187 336 - -
Cca02g01613 1116 CDD HATPase_ETR2_ERS2-EIN4-like 475 607 - -
Cca02g01613 1116 Gene3D - 161 334 IPR029016 -
Cca02g01613 1116 SMART gaf_1 184 343 IPR003018 GO:0005515
Cca02g01613 1116 Gene3D Vaccinia Virus protein VP39 843 1102 IPR029063 -
Cca02g01613 1116 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 844 1111 IPR029063 -
Cca02g01613 1116 Gene3D - 634 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01613 Cca-Chr2 34919786 34928770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01613 23 756 Miscellaneous Gene Families AT3G04580 61.580 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g01613 Methyltransf_23 9.8e-11 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01613 K14509 - gmx:100101892 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03086 03 52324054 52327854 Cca02g01613 02 34919786 34928770 ECH
Cca02g01613 02 34919786 34928770 Cca02g01613 02 34919786 34928770 ECH