Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01612 ATGTCGAACCGGTGGTGGACCGGGTCCATGGGTCTGGATAACTCTGGGGACTCGATGAGAAAAGCGGATCTGGGGTTTTCCATGAACGAGAGTGCGGTGACGAACCACATAGGGGAAGAAGAAGAGGAGAAGGAGAACAGCGACGAGCCAAGGGAGGGGGCCATCGACGTGGCCACCACGCGCCGCCCAAGGGGGCGTCCACCGGGCTCAAAGAACAAGCCCAAGCCGCCCATATTCGTCACCAGAGACAGCCCTAACGCGCTGCGAAGCCACGTCATGGAGGTAGCCGCCGGAGCCGACATCGTCGACTGCGTGCTCCAGTTCGCCAGGAGGCGCCAGCGCGGGGTCAGCGTCCTCAGCGGCAGCGGCGCCGTCGTCAACGTCACTCTCCGCCAGCCCACGGCGCCTGGAGCCGCCATGGCGCTCCACGGCCGCTTCGACATCGTCTCCCTCACCGGCTCGTTTCTGCCCGGGCCCTCCCCCGCCGCCGCCACCGGTCTCACCGTTTACCTCGCCGGAGGGCAGGGGCAGATCGTCGGCGGCGGGGTGGTGGGGCCGCTCGTGGCGGCGGGTCCCGTTTTGATAATGGCGGCTACGTTTTCCAATGCAACCTACGAGAGGTTGCCCTTGGAGGAGGATGATCAGGAGCACGGTGGGTCTCCGCCGGGCCTGGGCGGTGGTCCCGGCGAGGCCTCGTCGTCGATTTCGGTGTataataataataataatGTTCCTCCGAATTTGGGTGTTCCGAACGGGCAAGGGCAACAGATGAATCATGAAGCTTATTCTCTTTGGAGTCATGCGAGACCACCTTACTAG 822 0.6314 MSNRWWTGSMGLDNSGDSMRKADLGFSMNESAVTNHIGEEEEEKENSDEPREGAIDVATTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAAGADIVDCVLQFARRRQRGVSVLSGSGAVVNVTLRQPTAPGAAMALHGRFDIVSLTGSFLPGPSPAAATGLTVYLAGGQGQIVGGGVVGPLVAAGPVLIMAATFSNATYERLPLEEDDQEHGGSPPGLGGGPGEASSSISVYNNNNNVPPNLGVPNGQGQQMNHEAYSLWSHARPPY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01612 273 MobiDBLite consensus disorder prediction 1 83 - -
Cca02g01612 273 MobiDBLite consensus disorder prediction 212 273 - -
Cca02g01612 273 CDD DUF296 89 172 IPR005175 -
Cca02g01612 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 214 - -
Cca02g01612 273 MobiDBLite consensus disorder prediction 232 263 - -
Cca02g01612 273 Gene3D - 88 217 - -
Cca02g01612 273 PIRSF ESCAROLA 11 273 IPR014476 GO:0003680
Cca02g01612 273 ProSiteProfiles PPC domain profile profile. 85 225 IPR005175 -
Cca02g01612 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 12 273 - -
Cca02g01612 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 273 IPR014476 GO:0003680
Cca02g01612 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 202 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01612 Cca-Chr2 34897096 34898579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01612 1 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 55.405 2.53e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01612 - - gmx:100797639 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01612 02 34897096 34898579 Cca02g01612 02 34897096 34898579 ECH