Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01608 ATGGACACTCCAAACCCAAACTCGGAAAACCCTTCCCTTCACTCTTGTATATTTCCCTCTAATGAAGAGAAACAAAAGGTTTCATACAGAGGGGTCCGAAGGCGGGGACGCGGGAAGTACGCGGCGGAGATAAGGGACTCTACCAGGAATGGGTCGAGGGTTTGGTTGGGAACTTTCGACACTGCCGAGGATGCTGCTTTGGCTTATGACCAAGCTGCGTTAGCAACGCGCGGCCACAACGCAGTTCTCAATTTTCAACCTCAACTCGTGCTGCAATCGCTTCGCAACATGGACTTCAGGTTCCAGAGAGGTTTCTCTCCCGTTTTGGAACTGAAGAAGCGCAACTTCATGAACAGGAAGATGAGAAAGCATCGGGAACGGCTTCGGCTCGAAAACGTTGTCGTGTTGGAAGATTTGGGAGCACATTATTTGGAACAACTTCTCACACTCTGCGAACATTCATCAGTTCCACCTACTTCTTCGCCCTAA 489 0.499 MDTPNPNSENPSLHSCIFPSNEEKQKVSYRGVRRRGRGKYAAEIRDSTRNGSRVWLGTFDTAEDAALAYDQAALATRGHNAVLNFQPQLVLQSLRNMDFRFQRGFSPVLELKKRNFMNRKMRKHRERLRLENVVVLEDLGAHYLEQLLTLCEHSSVPPTSSP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01608 162 CDD AP2 39 88 IPR001471 GO:0003700|GO:0006355
Cca02g01608 162 Pfam AP2 domain 28 79 IPR001471 GO:0003700|GO:0006355
Cca02g01608 162 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Cca02g01608 162 ProSiteProfiles AP2/ERF domain profile. 28 86 IPR001471 GO:0003700|GO:0006355
Cca02g01608 162 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Cca02g01608 162 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Cca02g01608 162 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Cca02g01608 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 19 155 - -
Cca02g01608 162 SMART rav1_2 28 92 IPR001471 GO:0003700|GO:0006355
Cca02g01608 162 PANTHER DNA-BINDING DOMAIN 19 155 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01608 Cca-Chr2 34849302 34849790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01608 24 154 AP2-EREBP Transcription Factor Family AT3G23240 53.237 1.70e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01608 AP2 8.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01608 K14516 - csin:114256544 146.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03083 03 52307826 52308362 Cca02g01608 02 34849302 34849790 ECH
Cca02g01023 02 26954291 26954926 Cca02g01608 02 34849302 34849790 ECH
Cca03g02200 03 42730758 42731399 Cca02g01608 02 34849302 34849790 ECH
Cca02g01608 02 34849302 34849790 Cca02g01608 02 34849302 34849790 ECH