Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01606 ATGGACCAACCTCTTCTCGACGACATAATCAATCGCCTTCTCGAAGTTCGCGCGCGTCCCGGCAAGCAGGTGCAGCTCTCCGAGTCCGAGATCCGCCAGCTCTGCGCCGCCTCCAGAGATATTTTCTTGCAGCAACCTAATTTGTTGGAGCTTGAGGCGCCTATTAAGATTTGCGGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTGAGGCCAACTACCTATTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTGGAAACGATATGCCTTCTCCTAGCATATAAAATAAAATATCCTGAGAATTTTTTCCTTTTGAGGGGTAACCATGAATGTGCTTCTATTAACCGTATATATGGGTTTTACGATGAGTGTAAAAGAAGGTTCAACGTAAGGTTATGGAAGACATTTACAGAATGCTTCAATTGCCTGCCTGTGGCTGCACTCATTGATGAAAAGATTTTGTGCATGCATGGGGGTCTTTCTCCTGACTTACTTAATTTGGATCAGATTAGAAATCTACAGAGGCCCACTGACGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGACCCTAGCAAAGAGGTTCAAGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATACAGTTTCAGAGTTTCTTCAAAAACATGATCTGGATCTTATTTGTCGTGCTCATCAGGTGGTGGAGGATGGGTACGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAATTTGACAATGCTGGGGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAATCAAAGCTCAACTTCGGAAGTACTGCTACTACTAAGCCAGGAAACTCTCCAGCCGGTGTAAAGTCCTTCCTGGGTACAAAAGTTTGA 981 0.4353 MDQPLLDDIINRLLEVRARPGKQVQLSESEIRQLCAASRDIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLLNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADTVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKSKLNFGSTATTKPGNSPAGVKSFLGTKV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01606 326 CDD MPP_PP1_PPKL 6 294 - -
Cca02g01606 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Cca02g01606 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Cca02g01606 326 SUPERFAMILY Metallo-dependent phosphatases 21 299 IPR029052 -
Cca02g01606 326 Gene3D - 2 305 IPR029052 -
Cca02g01606 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Cca02g01606 326 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Cca02g01606 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Cca02g01606 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Cca02g01606 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01606 Cca-Chr2 34820705 34827393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01606 55 239 Calmodulin-binding Proteins AT5G63870 32.273 4.44e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01606 K06269 - gmx:100799218 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03082 03 52295459 52300413 Cca02g01606 02 34820705 34827393 ECH
Cca02g01606 02 34820705 34827393 Cca02g01606 02 34820705 34827393 ECH