Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01601 aTGGCGACACCACCGTCTACCTCAGCTTCGCAATCGCAATTCGTCTATTCCAACCCTTCCTACTTCCCCGTCCCCTTTCACCTACAGCAACCCGTAACCACTCACTACGCTGCGCCATACGTCGCCGCTCCCTCCGTGCAACTCCCCGCACCTCCCGTCGTCGGCCCCGTTGCGTCCGCGCCGGTTCCCGCCGTATACTCCGCCGTGCCGCAGTATCAGGCACAGCAGTTATTCGAGAGAGATGCACAGATAATAACGCCGGAGGCTCTTGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTCGAGCACAAAACTGATGCAAAAAGGAAAGCGGTTCCTCGCAAAGCTGCAGGCCAATCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTCTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAACATGGCACGGGTTGTCAGAGATAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACGTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGTCCAATAAAACTACGCAAGAGTAAGTGGAAGGAGAGAACAGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAGTGA 732 0.4986 MATPPSTSASQSQFVYSNPSYFPVPFHLQQPVTTHYAAPYVAAPSVQLPAPPVVGPVASAPVPAVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKRKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDVAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNHIQKKPKMPRKGVLHK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01601 243 SMART rrm1_1 136 209 IPR000504 GO:0003723
Cca02g01601 243 PANTHER RNA-BINDING PROTEIN 42-LIKE 33 243 - -
Cca02g01601 243 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 243 - -
Cca02g01601 243 Gene3D - 82 227 IPR012677 -
Cca02g01601 243 SUPERFAMILY RNA-binding domain, RBD 118 215 IPR035979 GO:0003676
Cca02g01601 243 MobiDBLite consensus disorder prediction 222 243 - -
Cca02g01601 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Cca02g01601 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Cca02g01601 243 CDD RRM_RBM42 129 211 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01601 Cca-Chr2 34777276 34780418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01601 137 224 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 1.30e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01601 K25079 - gmx:100800281 436.417