Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01598 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAGAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCCGCCAAGCAATGCAAGGCTCGTTGGTACGAGTGGCTCGATCCTTCCATCAAAAAGACCGAGTGGACAAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACGCAGTGGAGAACAATTGCTCCAATTGTGGGCCGTACCCCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTGCTTGATGCAGCCTGTGTGAAAGATGAGAACTATGAGCCAGGTGATGATCCTCGGAAGTTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGCCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGATTAGCAAATACAAAGGGCAAGAAAGCAAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCTAGGAGGCTTGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGACTACAATGCTGAAATTCCATTTGAAAAAAGACCCCCTCCGGGATTTTTTGATGTTACCGATGAAGATAGACCAGTGGAGCAGCCCAAGTTCCCCACTACAATTGAAGAACTTGAAGGAAAAAGGAGGGTTGATATTGAAGCACAGTTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATACTGCATGCCAACAAGCTCAATGATCCAGAAACAGTAAGAAAGAGGTCAAAACTAATGCTTCCACCACCCCAGATTTCTGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCAACTGATCTTGCAGGGAGTCAGGAACTTGCTGAAGGTAGTGGTGCAACACGTGCTCTTCTGGCAAATTATGCGCAGACACCTGGTCAAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCGGCTAGTAAAGGAGATGCCATCATGATGGAAGCTGAAAATCTGGCCAGATTGAGGGAGTCTCAAACGCCATTGTTAGGAGGAGAGAACCCAGATTTGCATCCTTCAGATTTTTCTGGGGTTACACCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCAGGAGCTGCAGGACTAACTCCTAGAATTGGCATGACACCAACTAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGACATGAATATGCATGACAGCACTAAACTTGAGTTACAGAGACAGGCTGATATGAGGAGGAGCTTACGTTCTGGTTTAGGAAGCCTTCCACAGCCTAAAAATGAGTATCAAATAGTGATGCAACCAGTTCCGGAAGACGCTGAAGAGACTACTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATTGCTAGAGAAAAAGCAGAAGAAGAGGCAAGGCAACAAGCATTACTTAGAAAACGATCAAAAGTCCTTCAACGGGAACTTCCTAGACCTCCTGCTGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATTAAAAGGGAACTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCGCTTGATGAGAAAGTGAATAAGGAGAAAAAGAAAGGAACCAAGCGTGCTGTAAATGCTGTCCCAGTGATAGACGATTTTGAGGAAGATGAAATGAAAGACGCTGATAAGTTGATAAAGGAAGAGGCCCAGTATCTTTGTGTAGCAATGGGGCATGAAAGTGAACCCCTTGATGAATTTATCGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACCCGTAATGCCTATGGTCTCTCGAGTGTTGCTGGAAATATAGAAAAGCTAGCAGCTTTGCAGAATGAATTTGATAATGTGAGAAACAAATTGGATGATGGTAAGGAGAAGATGGTACGACTTGAGAAGAAGGTGATGGTTCTCACACAAGGCTATGAGGTACGTTATTAA 2184 0.4396 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYATDLAGSQELAEGSGATRALLANYAQTPGQGMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPDLHPSDFSGVTPKKKEIQTPNPMLTPSATPGAAGLTPRIGMTPTRDGFSFSMTPKGTPLRDELHINEDMNMHDSTKLELQRQADMRRSLRSGLGSLPQPKNEYQIVMQPVPEDAEETTEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIKRELLTLLEHDNAKYPLDEKVNKEKKKGTKRAVNAVPVIDDFEEDEMKDADKLIKEEAQYLCVAMGHESEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNIEKLAALQNEFDNVRNKLDDGKEKMVRLEKKVMVLTQGYEVRY 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01598 727 MobiDBLite consensus disorder prediction 477 512 - -
Cca02g01598 727 CDD SANT_CDC5_II 55 106 - -
Cca02g01598 727 Pfam pre-mRNA splicing factor component 406 653 IPR021786 -
Cca02g01598 727 Coils Coil 688 715 - -
Cca02g01598 727 Gene3D - 5 59 - -
Cca02g01598 727 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cca02g01598 727 MobiDBLite consensus disorder prediction 399 413 - -
Cca02g01598 727 Pfam Myb-like DNA-binding domain 10 70 - -
Cca02g01598 727 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cca02g01598 727 MobiDBLite consensus disorder prediction 265 285 - -
Cca02g01598 727 Coils Coil 167 187 - -
Cca02g01598 727 SMART sant 6 55 IPR001005 -
Cca02g01598 727 SMART sant 58 105 IPR001005 -
Cca02g01598 727 MobiDBLite consensus disorder prediction 113 150 - -
Cca02g01598 727 MobiDBLite consensus disorder prediction 375 447 - -
Cca02g01598 727 Gene3D - 60 114 - -
Cca02g01598 727 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cca02g01598 727 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cca02g01598 727 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 726 - -
Cca02g01598 727 MobiDBLite consensus disorder prediction 222 237 - -
Cca02g01598 727 MobiDBLite consensus disorder prediction 213 237 - -
Cca02g01598 727 CDD SANT 10 53 IPR001005 -
Cca02g01598 727 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01598 Cca-Chr2 34719621 34724642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01598 1 726 MYB-Related Transcription Factor Family AT1G09770 80.164 0.0 1156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01598 Myb_Cef 3.9e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01598 K12860 - gmx:100790369 1328.15