Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01597 ATGGTGAAAACTCCTTGTTGTGAGAAGATGGGCTTGAAGAAGGGACCATGGACACCGGAAGAAGATCAGATATTGATTTCTCATATTCAACAATATGGCCATGGAAATTGGCGTGCCCTTCCAAAACAAGCTGGTTTGTCAAGGTGCGGTAAGAGTTGTAGACTTCGTTGGATAAATTACTTAAGGCCGGATATTAAACGAGGAAGATTCAGCAAGGAAGAAGAAGAGATCATCATCAAATTACATGGAATTCTTGGAAATAGATGGGCTACTATTGCGACAAGATTACCGGGACGAACTGACAATGAAATAAAGAATTTTTGGCACACCCATCTGAAGAAGAGGCTTGAGAGAAGTGAATTGCAAGGTTCCTCGAATTCCTTGCAAGAGGCACAAGCAGTTTGTAGTGCAGGGAGTTCAATAAATATGGCACAAGGAGTGGTGGATGCTTCGGATGCTACTTCTTCTAGTGTCGATGGGAAACTATTGATTGCCAATGACAGTTTACTCTCGAGGAAAAATCCACCTATTGTAGGTCTAGGATTTTATGGCGCAGTCTCTTCTGATATTTCGGGACAAATAATTCGCAATAATTCTCACAGTGTCATCGGTGAAGAAATGGAGTTTTGGTATAATATGTTTATGAACAGTCATCACAAGGGTATCAAAATGTAA 675 0.4074 MVKTPCCEKMGLKKGPWTPEEDQILISHIQQYGHGNWRALPKQAGLSRCGKSCRLRWINYLRPDIKRGRFSKEEEEIIIKLHGILGNRWATIATRLPGRTDNEIKNFWHTHLKKRLERSELQGSSNSLQEAQAVCSAGSSINMAQGVVDASDATSSSVDGKLLIANDSLLSRKNPPIVGLGFYGAVSSDISGQIIRNNSHSVIGEEMEFWYNMFMNSHHKGIKM 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01597 224 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g01597 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Cca02g01597 224 CDD SANT 69 112 IPR001005 -
Cca02g01597 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca02g01597 224 Gene3D - 13 66 - -
Cca02g01597 224 CDD SANT 16 61 IPR001005 -
Cca02g01597 224 Gene3D - 68 135 - -
Cca02g01597 224 PANTHER MYB TRANSCRIPTION FACTOR 1 219 - -
Cca02g01597 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca02g01597 224 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g01597 224 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca02g01597 224 SMART sant 66 114 IPR001005 -
Cca02g01597 224 SMART sant 13 63 IPR001005 -
Cca02g01597 224 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Cca02g01597 224 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01597 Cca-Chr2 34713787 34714961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01597 1 214 MYB Transcription Factor Family AT2G31180 47.280 1.73e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01597 Myb_DNA-binding 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01597 K09422 - gmx:100797027 319.701