LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g01594	ATGGCTCCTAATCCAAGAGTCATTAACGCCTATAATGCCATGAGTTCCTTAGGAATTTCTGTTGAAGAGGTGAAACCGGTGTTGAAAAGATTGTTACAATTGTATCAGAATAACTGGGAACTTATTGAAGAAGACAATTATCGTACACTTATAGATGCATACTTTGAATTGAAGGAGGAAGATAAGCAAGCAGAAGGTAAGAGAAAAGCTCTAATCAATTATCCTGATGGGGAAAGGCCAAAACAGAAACTGCATTTGGTGGATGGAGATGACCAGGTTTCATCATCTGACAACTCAAAACAAGAGTTGTCTGCAGAAAACACTGAGATACATTCAAAGACTTTTAAACAGGAAATTGTTGAACCTTCTCAACCCTGCATTGGAGATATAGAGGCCACATCCAGTTCACAAAAATTGCGCACAATGTTGAATGAGGGAGAAAGAATCTCACCTTTACCTTGCAAGGTTGCTAGAGATGGAAAATTGCATCCTGAGAAAGCTTCAGCTGCAGGGCATTGTGAAGATCCAATTGATAAAGCTAGCAATCCTCATTTCCATAGGAAAAATATTTCAAGTGATCATCATCAGAAGGAGCTTATGGCACCAAGAACTGCGAAACACAAGTTACATCTTGGACCTGTTTCAAAGAGTTACGATGGCTCATCTGATGTTTCAAAAGGAAATCTTCATGCCAAATCTCTGTTAGCTCTGTTTCATAATGTGCACAAGAAAGGTGATAGCTCAGCTTGCAATAATAACAACAGAACTCAGAAGGGTGATATTAACATTGCTTCTTCACCTTTGGGAGAAGTTAAAATTTTTTTAAACTGCGATGCTGCTTTGAGACAACCAAAATTCCATATTCCTGATTTGGATGCTGTTATGAAGTCCATGGAGGAGAAATACCTGAAGGGTTACAAGATCGTTGAGCCTCAATCATCTATGGTGAAGGTATTAGATGATTTATGTGGAAGTTACTTGAAGCTGGGCTTGAATTTAAATCGAAAGGGGTCACACAATGTGACATGTCTGCCACAGCAAGCAGTTACTGAACATGAAAATAATTCCTTTCACTTTGTCAGTGACCTTACAAAAGGTTCAGAGAATGTTAAAATATCATTGTTAGATGAAACTGGAAGTGAGGACTTGCCAAAGTTTAATTACATACCCAATAATGTAATATATCAAGATGCTAACGTGAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTACCTTTTCCTTGTGCATGTGCTCAAGAAACAGGTGGGGAGTTTGCTTACACTCCACAAGGTTTGTTGAATGAAGACTTTTTAACAGTTTGCATGTCTATGAAAATGGAACCACAAGATCATCATTTTGTATATTGCCAAGTATGCCCACTGGAGAGGTCTAAGAATGACAACAAAACTGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGCTTAGGATGTAAATTGCAGGTGTTTTTGACTGGAGAAGGTAAGGGATGGGGCGTCAGAGCTCTAGAATATTTGCCTAAGGGATGTTTTGTATGTGAATATGCCGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTGTGCAGAACAGCAGCAATGATAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCGGAAGGGGTGTTAAAGGATGAAGAAGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTGGGATGCAAATCTGATAGACATTCCCGTTGAAGTGGAAACTCCTGATCGTCACTATTATCATCTGGCACTCTTTACAAACAGAAATGTAAACGCATACGAGGAGTTGACATGGGACTATTGTATTGACTTTGATGATCATGAACATCCTATTCAAGCATTTAAGTGTTGTTGTGGAAGTGCATTCTGCCGTGATAAGAAACAAAAAGGAACTAATAGATCATTGAAAGGTAAAAAACACAGGGAATAA	2082	0.3929	MAPNPRVINAYNAMSSLGISVEEVKPVLKRLLQLYQNNWELIEEDNYRTLIDAYFELKEEDKQAEGKRKALINYPDGERPKQKLHLVDGDDQVSSSDNSKQELSAENTEIHSKTFKQEIVEPSQPCIGDIEATSSSQKLRTMLNEGERISPLPCKVARDGKLHPEKASAAGHCEDPIDKASNPHFHRKNISSDHHQKELMAPRTAKHKLHLGPVSKSYDGSSDVSKGNLHAKSLLALFHNVHKKGDSSACNNNNRTQKGDINIASSPLGEVKIFLNCDAALRQPKFHIPDLDAVMKSMEEKYLKGYKIVEPQSSMVKVLDDLCGSYLKLGLNLNRKGSHNVTCLPQQAVTEHENNSFHFVSDLTKGSENVKISLLDETGSEDLPKFNYIPNNVIYQDANVNISLARIADEGCCADCAGDCLSLPFPCACAQETGGEFAYTPQGLLNEDFLTVCMSMKMEPQDHHFVYCQVCPLERSKNDNKTEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLGCKLQVFLTGEGKGWGVRALEYLPKGCFVCEYAGEILTNTELYERIVQNSSNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCWDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYCIDFDDHEHPIQAFKCCCGSAFCRDKKQKGTNRSLKGKKHRE	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca02g01594	693	Gene3D	SET domain	363	677	IPR046341	-
	Cca02g01594	693	SMART	preset_2	360	502	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Cca02g01594	693	Gene3D	-	1	60	IPR043017	-
	Cca02g01594	693	SMART	set_7	518	658	IPR001214	GO:0005515
	Cca02g01594	693	Pfam	Pre-SET motif	364	510	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Cca02g01594	693	ProSiteProfiles	SET domain profile.	518	652	IPR001214	GO:0005515
	Cca02g01594	693	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	690	IPR025776	-
	Cca02g01594	693	CDD	SET_SETDB-like	384	651	-	-
	Cca02g01594	693	MobiDBLite	consensus disorder prediction	74	90	-	-
	Cca02g01594	693	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	GO:0018024
	Cca02g01594	693	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN	1	687	-	-
	Cca02g01594	693	SUPERFAMILY	SET domain	370	675	IPR046341	-
	Cca02g01594	693	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	687	-	-
	Cca02g01594	693	MobiDBLite	consensus disorder prediction	74	110	-	-
	Cca02g01594	693	ProSiteProfiles	Pre-SET domain profile.	412	515	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Cca02g01594	693	Pfam	SET domain	530	651	IPR001214	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g01594	Cca-Chr2	34671928	34678655	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g01594	494	675	C2H2 Transcription Factor Family	AT2G23740	40.107	2.41e-29	123

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Cca02g01594		Pre-SET	2.3e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g01594	-		-	gsj:114402909	1110.9