Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01590 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGCGCTTCCAGTGGTTCTTTCAATGATGATTCAGATGACGAGGAATCCTTAGTTCCTGAAGTAGATGATGACGTGCATCTTGAGGAGCCATTAACTGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAAATCTTCAGGGTGATGATCTGGAAACTGCCGTTGCTGATGAGATGACTACTTTTAAAGAAGAGTGGGAAGCTGTTCTAGATGACCTTGAAACCGAAAGTGCTCACTTACTGGAACAACTTGATGGGGCTGGCATTGAACTCCCTAGCCTTTATAAGATGATTGAAAGAGAAGCTCCCAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGGTCTCTGGCAACTGCTGAAATTGCTATGTCAATTGCTGATGCTGAGAAACATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAAGGTGCTAGTGGCTTTCTTCAAAAAAAACTGTGTGACGAATCCCAGGAGCCAGCAAAGAAAGAAACCGAGGGCGATTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGGCAATGATGCTTCATTTGGTGGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGGAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTCTCTGAAGAGCAAAGGAGAAAATTTAAAAAGGTCAAAGAAGAGGATGATGCAGTTGTTGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCATCAAAAGAAAAGTAAACAGGATGGAACCAGTGATGAGGGGAAAATTGTGTCTGACAATGGCAAGGATACATGTGTGCTTATGGAGACCAATAAAATTGAAGGTTTTGATGCCAGTCATCATGTTGACAAAGAAAAGCCTATGAGTACTGATGATTTGTTAGATCCACCCAAATCTTCATCAGATGACATTATTGAACAGAGAGGAATCAAACGTGTAAACAGTGGTGGGTTTGATGCTGATAATAAGAAGTGTCGGATTGTTATTATTGACAGTGATAATGAAGCAGACGTCACTGAAGAGAAATTAGATTGCAATACTCAAGAGGTAAAAGAAGATTTATGTAACAATGGTGCTGATTCTCTTCCTTCAGAGCGTTTAGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTACATCCACACCCTTTCTTGAAAGTGATTATTTGTGGAGATTGCAATTGCTTATTGCAGGAAAAGGCACATAAAAAGGATCTGGGACAAGATTGGTTGGAGGGTTACTGTAGATGGTGTGGAGAAAGCAATGACTTAGTTAGCTGTAAATTATGCAAGAGTTTATTCTGCACCAAATGTTTAAAGAAGAATCTCGGTGTAGAATTGGTTCCCGAAGCTCAGGCATCTAGCTGGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAGACTGTCCTTGCAATTAGAGAAAGCTACGGGGTCTGCTGATATAATGGTTTCCAGTTCTGGTAGtgattcagataattcagatgattcagatgattctgatgaAGATGTTAGTGCTACAATCAGCTCCAAGCGAAGACAAAAAAAGAATATTCGGAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGGCAGTTTTCTGCCTCGTCAGTTGAGATGAGCTCTGACGGCTGTAATGGGAATTTACCAGAAGGTGCAACTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTAAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAGCTGAAGGCCCATCAGATTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACTATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGAATTGGGGTTAAGAACTGCGCTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGGCAGGAGTTCCTCAAGTGGAGACCTTCTGAGTTAAAGCCACTCAGAGTCTTCATGCTGGAAGATGTATCTAGAGATAGAAGGGCAGAATTGCTTGCTAAATGGAGATCTAAAGGTGGTGTCTTTTTGATTGGCTATACTGCTTTTCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGAACATGGCCAGGGAAATTTGCCATGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTTACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCACTTACTGGATCACCTCTTCAAAACAATCTCATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAACGGACAACACACCAATTCAACTCTGATTGATGTGAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTTGTTCAAAGAATGGACATGAATGTCGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACCCAGGTGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCCGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGCTGACAAAAGAAGTCAAGGACTACGTAAAGCATGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGATGAAAATTCTGATTTTAATGTGCTTGCTGGAGAGAAGATGAAGTATGCAAATGACTTGCTGCAAAGGAAAGATGATAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCACGGAAAAATTTATAAAGAGCTTGATCACAGTGGCAAAATGGTTTTACTGATGGAGATTCTAACCATGAGTTCTGATGTGGGTGACAAGGTTTTAGTTTTTAGTCAGAGCATACCAACCCTAGATCTCATTGAACTTTATCTCTCAAGAATACCTCGACGTGGCAAACGAGGGAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCAAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGACAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAAGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAACAGGTACATAGGACTATTTCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGGGCATCAAGACAACCCAATTTTGGTTGGACATTCACTGAAACACACAGTACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAACCTTACTTAGCAAGCATCATCCGAGGTGGATTGCCAATTATCATTTACATGAATCTCTGTTACAAGAAAATGAAGAGGAAAAACTATCAAAAGAGGAGCAGGATATGGCATGGGAGGTTTATCGGAAATCGCTGGAATGGGAAGAAGTGCAGAGGGTACCACTCGGTGAGTCTATTATGCCTGAACAAAAGCCAGAAATGCCAAATGCAGTGCCCCCCGTATCAGAAACTCGCAGCACTTTGCCAAGTAAACTAAGCAGACGTTTCGCGACGCGGAAATGCACCAACCTTGCGCACTTGTTGACACTTAGAAGCCAGGGAACAAAATTCGGTTGCAGTACTGTCTGTGGGGAATGTGCCCAGGAGATACGGTGGGAAGACTTGAAGAAGAGTTAG 4383 0.4102 MEGKTEDEVVDIESASSGSFNDDSDDEESLVPEVDDDVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVADEMTTFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKMIEREAPNVCSTEAWKKRNHWVGSLATAEIAMSIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDESQEPAKKETEGDWDLFNKIVSDGSGNDASFGGKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSEEQRRKFKKVKEEDDAVVDRKLQIRLKHRRHQKKSKQDGTSDEGKIVSDNGKDTCVLMETNKIEGFDASHHVDKEKPMSTDDLLDPPKSSSDDIIEQRGIKRVNSGGFDADNKKCRIVIIDSDNEADVTEEKLDCNTQEVKEDLCNNGADSLPSERLDEKFWCTVCDKVALEVHPHPFLKVIICGDCNCLLQEKAHKKDLGQDWLEGYCRWCGESNDLVSCKLCKSLFCTKCLKKNLGVELVPEAQASSWHCCCCHPNLLQRLSLQLEKATGSADIMVSSSGSDSDNSDDSDDSDEDVSATISSKRRQKKNIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSVEMSSDGCNGNLPEGATVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVELGLRTALIVTPVNVLHNWRQEFLKWRPSELKPLRVFMLEDVSRDRRAELLAKWRSKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLIDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDFNVLAGEKMKYANDLLQRKDDNGFFLKGWWNDLLHGKIYKELDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLADLSQENGHQDNPILVGHSLKHTVPHSNGSSYSDKLMETLLSKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIMPEQKPEMPNAVPPVSETRSTLPSKLSRRFATRKCTNLAHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKKS 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01590 1460 CDD SF2_C_SNF 1095 1238 - -
Cca02g01590 1460 MobiDBLite consensus disorder prediction 1 42 - -
Cca02g01590 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 959 1291 IPR027417 -
Cca02g01590 1460 Gene3D - 964 1306 IPR027417 -
Cca02g01590 1460 SMART helicmild6 1130 1227 IPR001650 -
Cca02g01590 1460 MobiDBLite consensus disorder prediction 322 347 - -
Cca02g01590 1460 MobiDBLite consensus disorder prediction 574 603 - -
Cca02g01590 1460 SUPERFAMILY FYVE/PHD zinc finger 504 559 IPR011011 -
Cca02g01590 1460 Pfam SNF2-related domain 721 1022 IPR000330 GO:0005524|GO:0140658
Cca02g01590 1460 MobiDBLite consensus disorder prediction 333 347 - -
Cca02g01590 1460 MobiDBLite consensus disorder prediction 1389 1411 - -
Cca02g01590 1460 PANTHER RAD54-LIKE 29 1458 - -
Cca02g01590 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 953 IPR027417 -
Cca02g01590 1460 CDD ADDz_ATRX 461 555 - -
Cca02g01590 1460 PANTHER RAD54-LIKE 29 1458 IPR044574 GO:0016887
Cca02g01590 1460 MobiDBLite consensus disorder prediction 365 395 - -
Cca02g01590 1460 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1275 IPR001650 -
Cca02g01590 1460 Pfam Helicase conserved C-terminal domain 1103 1227 IPR001650 -
Cca02g01590 1460 ProSiteProfiles ADD domain profile. 449 581 IPR025766 -
Cca02g01590 1460 SMART ultradead3 695 916 IPR014001 -
Cca02g01590 1460 Coils Coil 107 127 - -
Cca02g01590 1460 MobiDBLite consensus disorder prediction 20 42 - -
Cca02g01590 1460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 721 904 IPR014001 -
Cca02g01590 1460 Coils Coil 49 76 - -
Cca02g01590 1460 Gene3D - 672 953 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01590 Cca-Chr2 34606407 34635509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01590 729 1280 RAD5 or RAD16-like Gene Family AT5G43530 25.314 6.70e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g01590 SNF2_N 3.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01590 K10779 - gmx:100794911 2589.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01590 02 34606407 34635509 Cca02g01590 02 34606407 34635509 ECH