Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01588 ATGAAAAATGCAACAAGTTTAAGAGGAACCAACGTCAAGAGAACAACCACCAAAATGCAAACCCATCTACTGTTCTTCTTCTATTGTTACATTGGCCTCTCACTCGTTTTAACTGAAGCTGCAGCAGATGATGAATTGTCAACTCTTCTCTCAATCAAATCCACTCTTATTGACCCAATGAGGCATCTGAAGGATTGGCAACTACCAAGCAATGTGACAGGTTCACCTCATTGTAACTGGACTGGAGTTGGTTGCAACTCTAAAGGCTTTGTAGTGAGTCTTGACCTCTCCAACATGAACCTCAGTGGTTGTGTTTCGGACCGCATTCAATCTCTTTCAAGTCTATCTTCTTTCAACATAAGCTGTAACAACTTCGCTTCATCACTCCCCAAATCACTGTCCAACCTCACCTCTCTCGAGAGCTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTTCCCACTGGTCTTGGAAGAGCTGCAGCCTTGAGATCAATTAATGCATCAAGCAATGATTTTTCAGGTTTTCTTCCTGAGGATATCGGAAATGCAACGTTGCTTGAGAGCCTTGATTTTCGAGGGAGCTACTTTGTGAGTTCAATCCCCAGGAGTTTTAAGAATTTGCAGAAGCTCAAGTTTCTAGGTCTTTCAGGCAATAACTTCACAGGGAGGATTCCGGGTTATCTTGGGGAACTCACTTCTCTGGAGATATTAATCATAGGATACAATGAGTTTGAAGGTGAGATCCCTGCAGAGTTTGGCAACCTGACTAGTCTTCAATACCTTGACTTGGCTGTAGGCAGTCTCAGCGGACAAATTCCACCGGAATTGGGTAAGTTGACAAAACTCACCACAATTTATTTGTACCACAACAACTTCACAGGAAAAATTCCACCTCAACTTGGCAACATTACTTCACTAGAATTTTTGGACCTATCTGACAATCAAATCTCAGGAGAGATTCCAGAAGAACTTGCTAACTTGGAAAACCTGAAGCTCTTAAATCTGATGACTAACAAACTAACTGGTCCAGTACCCGAGAAGCTTGGTGAATTGAAAAATTTACAGGTGCTTGAGCTATGGAAAAATTCTTTACAGGGTCCTTTGCCTCAAAACCTTGGACTTAACTCTCCTTTGCAGTGGTTGGATGTATCCTCTAACTCATTATCCGGGGAGATCCCTCCAGGTTTGTGTACCACAGGCAATCTCACTAAACTAATCCTTTTCAATAATTCCTTCACTGGTTCCATTCCAAGTGGACTTGCAAACTGTTTGTCTTTGGTACGTGTTCGGATTCAGAACAATCTTATTTCTGAAACTATTCCGGTTGGCTTTGGAAACCTCCCTGGCCTTCAACGGCTGGAGTTGGCAAAGAACAACTTCACTGGGAAAATTCCTACAGATATTACCTCATCCACATCGCTTTCTTTCATTGATGTCTCTTGGAACCATCTTGAGTCATCTCTGCCGTCAGATATTCTTTCTATTCCAACCCTTCAAACCTTCATTGCCTCTCATAACAATTTTGGAGGAAATATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTGCTGGATCTTTCAAACACCCTTCTATATGGCACAATTCCTGAAAGTATTGCTTCTTGTGAAAAATTAGTTAACCTTAACCTTCGAAATAACCACTTGACAGGTGGAATCCCAAAATCAATCACAAACATGCCCACTTTGTCTGTTGTTGATCTATCCAACAATTCCTTGACTGGTAGGATACCTGAAAACTTTGGCAGCTCCCCAGCTCTGGAAATGCTGAACCTGTCCTATAACAAACTTGAGGGTCCAGTACCCTCAAATGGGATGTTGATGACTATAAATCCTAATGATCTTATCGGCAATGCGGGTCTTTGTGGGGGCATTCTCCCTCCATGTTCTCCAAGTTTGGCTGCGACTAGTCATCGAAAGAGCTCACATATCAGACACATCATTATTGGTTTTGTGACTGGCATTGCAGTGATATTAGCTCTTGGTGCAGTATATTTTGGTGGTAGATGTTTATACAAGAGATGGCACTTGTATAACAATTTTATCCATGATTGGTTCAAACATAGCAATGAAGATTGGCCCTGGAGATTAGTGGCATTCCAGAGGATCAGTTTCACTAGTAGTGACATCCTTACTTGCATACATGAATCAAATGTCATAGGCATGGGTGGCACTGGTATTGTTTACAAAGCTGAAATTCATAGGCCTCATGTAACCGTAGCAGTGAAAAAACTATGGAGGTCACAGACAGACATAGAAAATGGCAATGATATGTTAAGAGAAGTGGAACTCCTTGGGAGACTTCGGCACAGGAATATTGTAAGGCTGTTGGGGTATGTACACAATGAAAGGGATGTGATGATGGTTTACGATTACATGCCTAACGGGAATCTTGGAACAGCACTGCATGGTGAACAATCTGCAAGGTTGCTTGTTGACTGGGTCTCAaggtacaacatagctcttggagttgcacaggggcttaactacctccaccatgattgtcacccaccagttattcacagggatatcaagtctaacaacatacttcttgatgcaaatttagaggcaagaatagcagattttgggttggcaaggatGATGATTCAAAAGAATGAGACAGTTTCCATGGTGGCCGGATCATATGGATACATAGCACCAGAATATGGATACACTCTGAAGGTTGACGAGAAGATTGACATATACAGCTACGGGGTGGTGCTTTTGGAGCTCCTAACTGGCAGAATGCCTTTAGACCCTGCGTTTGAAGAATCGATTGACATAGTCGAATGGATAAGGAAAAAGAAAAACAATAAAGCCTTATTAGAAGCACTAGATCCTTCTATAGCTAGTCAGTGCAAACATGTCCAAGAAGAAATGCTGCTTGTACTCCGGATTGCACTTCTATGTACCGCAAAGCTTCCTAAGGAAAGACCTCACATGAGAGACATCATCACAATGCTTGGAGAGGCAAAGCCAAGAAGGAAAAGTGTTTGCCATAATGGGGGTCAAGACAGCAGTAGCACGGAAAAGCCAACCATTTTTACCTCCCCAGTAATAAGTCTTTTGTAG 3096 0.4025 MKNATSLRGTNVKRTTTKMQTHLLFFFYCYIGLSLVLTEAAADDELSTLLSIKSTLIDPMRHLKDWQLPSNVTGSPHCNWTGVGCNSKGFVVSLDLSNMNLSGCVSDRIQSLSSLSSFNISCNNFASSLPKSLSNLTSLESFDVSQNYFTGSFPTGLGRAAALRSINASSNDFSGFLPEDIGNATLLESLDFRGSYFVSSIPRSFKNLQKLKFLGLSGNNFTGRIPGYLGELTSLEILIIGYNEFEGEIPAEFGNLTSLQYLDLAVGSLSGQIPPELGKLTKLTTIYLYHNNFTGKIPPQLGNITSLEFLDLSDNQISGEIPEELANLENLKLLNLMTNKLTGPVPEKLGELKNLQVLELWKNSLQGPLPQNLGLNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFTGSIPSGLANCLSLVRVRIQNNLISETIPVGFGNLPGLQRLELAKNNFTGKIPTDITSSTSLSFIDVSWNHLESSLPSDILSIPTLQTFIASHNNFGGNIPDEFQDCPSLSVLDLSNTLLYGTIPESIASCEKLVNLNLRNNHLTGGIPKSITNMPTLSVVDLSNNSLTGRIPENFGSSPALEMLNLSYNKLEGPVPSNGMLMTINPNDLIGNAGLCGGILPPCSPSLAATSHRKSSHIRHIIIGFVTGIAVILALGAVYFGGRCLYKRWHLYNNFIHDWFKHSNEDWPWRLVAFQRISFTSSDILTCIHESNVIGMGGTGIVYKAEIHRPHVTVAVKKLWRSQTDIENGNDMLREVELLGRLRHRNIVRLLGYVHNERDVMMVYDYMPNGNLGTALHGEQSARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGRMPLDPAFEESIDIVEWIRKKKNNKALLEALDPSIASQCKHVQEEMLLVLRIALLCTAKLPKERPHMRDIITMLGEAKPRRKSVCHNGGQDSSSTEKPTIFTSPVISLL 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01588 1031 SUPERFAMILY RNI-like 269 614 - -
Cca02g01588 1031 SMART LRR_typ_2 304 328 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 112 135 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 448 472 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 280 303 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 136 160 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 208 232 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 352 376 IPR003591 -
Cca02g01588 1031 SMART LRR_typ_2 568 592 IPR003591 -
Cca02g01588 1031 Gene3D Phosphorylase Kinase; domain 1 722 804 - -
Cca02g01588 1031 Pfam Leucine rich repeat N-terminal domain 42 86 IPR013210 -
Cca02g01588 1031 Gene3D Ribonuclease Inhibitor 44 161 IPR032675 -
Cca02g01588 1031 Gene3D Ribonuclease Inhibitor 162 229 IPR032675 -
Cca02g01588 1031 ProSiteProfiles Protein kinase domain profile. 722 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01588 1031 Gene3D Ribonuclease Inhibitor 378 641 IPR032675 -
Cca02g01588 1031 SUPERFAMILY Protein kinase-like (PK-like) 717 996 IPR011009 -
Cca02g01588 1031 Gene3D Ribonuclease Inhibitor 230 302 IPR032675 -
Cca02g01588 1031 Gene3D Ribonuclease Inhibitor 303 377 IPR032675 -
Cca02g01588 1031 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1 23 1013 - -
Cca02g01588 1031 MobiDBLite consensus disorder prediction 1003 1031 - -
Cca02g01588 1031 SUPERFAMILY L domain-like 75 323 - -
Cca02g01588 1031 Pfam Leucine rich repeat 427 485 IPR001611 GO:0005515
Cca02g01588 1031 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Cca02g01588 1031 ProSitePatterns Protein kinases ATP-binding region signature. 728 752 IPR017441 GO:0005524
Cca02g01588 1031 Gene3D Transferase(Phosphotransferase) domain 1 805 1018 - -
Cca02g01588 1031 ProSiteProfiles Leucine-rich repeat profile. 306 329 IPR001611 GO:0005515
Cca02g01588 1031 MobiDBLite consensus disorder prediction 1008 1031 - -
Cca02g01588 1031 SMART serkin_6 722 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01588 1031 PANTHER UNNAMED PRODUCT 23 1013 - -
Cca02g01588 1031 Pfam Protein kinase domain 723 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01588 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01588 Cca-Chr2 34578774 34582335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01588 19 1031 Receptor kinase-like Gene Family AT1G08590 64.093 0.0 1299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca02g01588 Pkinase 9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01588 - - gmx:100793873 1843.17