Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01578 ATGGCCACCGCAGCGCAGCCCAAAGCCAAGAAAACGGCCACCTCCAAGAAGCCCCTCTCCCACCCTCCCTTCGCTGTGATGATAACAGAGGCCATTGCGAGTTTGAAGGAGAGAACCGGTTCGAGTCAATATGCCATAACCAAATTCATTGAAGGGAAGCACAAGGAGTTGCCTCCAACCTTTAAGAAACTTGTCCTCGTATATCTCAAGAAGTCAGTTGCTGCCGGAAAACTTGTTAAGGTTAAGAATTCCTTCAAGCTtgctccgactaagcctgctgcggctaaacctgcttctgctgctgctcctaagaagCCCAAAGCTGTGGCCAAGCCTGCTGCCAAGCCCGCCACCAGGCCCAAAGCTGCTGCTGCACCTAAGAAGAAGGCTGTCACGAAGCCCAAGGGGAAACCCGCTGCTGCAGCTGCAGCTGCGAAGCCCAAGGCTAAGGCCACTAAGGTGGCGGCAAAGAAGGTGGTTGCCAAGGCCGCTAAGAAGACTCCGGTGAAGGCCGTGAAGAAGCCCAAGAGTGTGGTAAAGAAGCCAAAGAGTGTGAAATCGCCTGCAAAGAAGGCTAAGAAGTGA 585 0.4838 MATAAQPKAKKTATSKKPLSHPPFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTFKKLVLVYLKKSVAAGKLVKVKNSFKLAPTKPAAAKPASAAAPKKPKAVAKPAAKPATRPKAAAAPKKKAVTKPKGKPAAAAAAAKPKAKATKVAAKKVVAKAAKKTPVKAVKKPKSVVKKPKSVKSPAKKAKK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01578 194 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g01578 194 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01578 194 CDD H15 20 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01578 194 Gene3D - 15 100 IPR036388 -
Cca02g01578 194 MobiDBLite consensus disorder prediction 151 194 - -
Cca02g01578 194 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01578 194 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01578 194 PRINTS Histone H5 signature 115 129 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01578 194 PRINTS Histone H5 signature 148 165 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01578 194 PRINTS Histone H5 signature 170 189 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01578 194 SUPERFAMILY "Winged helix" DNA-binding domain 17 98 IPR036390 -
Cca02g01578 194 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01578 194 PANTHER HISTONE H1 2 193 - -
Cca02g01578 194 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01578 194 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 193 - -
Cca02g01578 194 MobiDBLite consensus disorder prediction 90 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01578 Cca-Chr2 34446980 34448052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01578 22 158 Single Myb Histone (SMH) Gene Family AT1G72740 29.286 2.89e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01578 K11275 - gmx:100810590 139.428