Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01573 ATGGTGTCCACCCAGATGGTTAAAGTCAAGACAGAAACGCTACGAACATGCATGACATGCCCTCTCTGCCATAAGCTCGTCAGAGATGCCACCACCATCTCTCTCTGTCTTCACACATTTTGCAGGAAATGCATATATGAGAAACTCTCAGACGAGGAGATGGATTGCTGTCCTGTGTGCAATATTGATCTAGGCTGCCTTCCGGTGGAAAAACTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAATATTCCCTTTTAAAAGAAAAAAAATCAAGGCCCAAGAAGTTTTGTCTTCAATATCATTGCCTGCAAAAAGGAAGGAAAGATCGCTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCTGGCTTTACAGGAAAGAGAACAAAAACCAGTACCAGAAAAGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTCGAAGAATCCATAAAGAAGGAAGAAACAAATGCTGAAGATAAGATGGAATCCTCCACGGCTGAGCCTTCTAAGAAGCACAAGCACAATGAAGATACAGAGAACAGTGTGGAACATACAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTCGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAATTCCTTTTTCCAAATTAGAGTCCCCAACTACTCCTCGTGGTGGACAAGATACACCTGAAATTACAACCAAAACAGACCTACCTCCTGTCCAGAGTGAGTTAAACATTCCAAAATCCAAAAATAAGGATACTGGGAATAGAACAATATTCGGAGATGACAAGGATGCAAACAGCTTGCCTTCAGGACCAGTCAAGCGAAGAAGGTTGCGTCCAGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTGCCTCATCCCCAGCCCCACCAGATGCGCCAGGGGGCAAGTGCAACAGAAAAAACAGTGCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAGGATGGTACTGTGCCTGTCTCATTTATTCAAAAGTACCTAGTGAAGAAACTTAATCTTGCCAATGAAACAGAGGTGGAAATCATGTGCCGGGGTCAGCCAGTGCTACCATCTTTGCAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCTGTGGGGTCCTCAGCCAAAGATTTTGTGATGcctcttttcgttcaatgtcTccggcaccgcctcgtcccgggatgcccgctccgccaccgcctcgccccgGCATGCCACAACCACCTGGAGGTGGTGTTCCAGTACACCTCTTCTTCCCGGCGAGTTTACGCTGCCATTGCCGGAGAAAACTTGGTTGGTCGTAGCAGCAGTGAGTCCACCtcttcttcttactcttcttcctcttctgcttcCCCGGATCGTTCTCATTCCATTAGTCTTTCTCCGCCGGTGAGCATAAGCCCCAAAAGATCACAGCCTAAGTCGCCGGAAAATACCATGACCCACCATTCTCCGTCGCCGACGCTGTCGGCGACGGCGACACACTCGCCATCCTTGTCCACACTCTCGTCTCCGTCGCCGGTTTTCGGTCAGCACGTGCCTTCGTCGTCAATGTCGTCGTCGCCGGAGCGGAGGGAATGCCAGTCTCCGTCGCTCTCGCAACTCTCTCTGTCGCCGAAGAAAAACCCAGATGGTGAATCTGGCCCGGGACACGTTGTGCTTGAAAAGACGGATTCTTTTGGCTCATCTAAGGAGAAAAACAAAGGTGGGTCGCCGAGACTGTCGAATGCTTCTTCTATTGGGAAGTTGTCGGCGTTTTCTCTATCGTTGCCTGAAAAAGGAATGAACTTGCATCACGGGTTGGATCAGTCTCCGACCATATCCGATGTTTCAGATCGGTATCGGCATTCTCCTCTTTCATCACAGCCTCTATGCCGACGTTGA 2004 0.4496 MVSTQMVKVKTETLRTCMTCPLCHKLVRDATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAALRGCSFLLEESIKKEETNAEDKMESSTAEPSKKHKHNEDTENSVEHTEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPFSKLESPTTPRGGQDTPEITTKTDLPPVQSELNIPKSKNKDTGNRTIFGDDKDANSLPSGPVKRRRLRPAGQKRVAASEMSASSPAPPDAPGGKCNRKNSAIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLANETEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMPLFVQCLRHRLVPGCPLRHRLAPACHNHLEVVFQYTSSSRRVYAAIAGENLVGRSSSESTSSSYSSSSSASPDRSHSISLSPPVSISPKRSQPKSPENTMTHHSPSPTLSATATHSPSLSTLSSPSPVFGQHVPSSSMSSSPERRECQSPSLSQLSLSPKKNPDGESGPGHVVLEKTDSFGSSKEKNKGGSPRLSNASSIGKLSAFSLSLPEKGMNLHHGLDQSPTISDVSDRYRHSPLSSQPLCRR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01573 667 MobiDBLite consensus disorder prediction 474 581 - -
Cca02g01573 667 MobiDBLite consensus disorder prediction 208 263 - -
Cca02g01573 667 MobiDBLite consensus disorder prediction 641 658 - -
Cca02g01573 667 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Cca02g01573 667 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Cca02g01573 667 SMART ring_2 20 60 IPR001841 -
Cca02g01573 667 SUPERFAMILY RING/U-box 14 85 - -
Cca02g01573 667 MobiDBLite consensus disorder prediction 158 191 - -
Cca02g01573 667 MobiDBLite consensus disorder prediction 474 619 - -
Cca02g01573 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Cca02g01573 667 Gene3D - 310 406 - -
Cca02g01573 667 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 421 - -
Cca02g01573 667 MobiDBLite consensus disorder prediction 604 619 - -
Cca02g01573 667 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 421 IPR044807 GO:0004842
Cca02g01573 667 MobiDBLite consensus disorder prediction 208 315 - -
Cca02g01573 667 MobiDBLite consensus disorder prediction 634 667 - -
Cca02g01573 667 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 IPR018957 GO:0046872
Cca02g01573 667 MobiDBLite consensus disorder prediction 158 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01573 Cca-Chr2 34412362 34421822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01573 1 350 C3H Transcription Factor Family AT2G30580 43.316 3.51e-84 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01573 K16277 - gmx:100783999 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01067 02 27623956 27630118 Cca02g01573 02 34412362 34421822 ECH
Cca02g01573 02 34412362 34421822 Cca02g01573 02 34412362 34421822 ECH