Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01566 ATGGCGGGTAACAGCTCGGAGGGGTTGGGCGACGATTTCTTGGAACAGATCTTAGCAGTGCCGGAAGCTCCGGTGGGTTATGTGGGCAGAAACGTAGTGAGCGATGTGGGAGTGTTGCAATTGGGTTTCAGACCTCTGGGGTTGAATTTGGAGCAAAGCGGTTTTGTAAGACAGCAACAGCAAGAGGACCTGAATTCGACATCCTCATCAGCCTCTTCGACAGATATGCGGGGTTTGTTTTCAGCGTTTGGGCAAATGCATAGTCCTACTCTTGCTCCCTCTGtccgccccacgctgcctcctcaccctcaactccacctccaccAACAGGCTTTTCAGGGCCAGGCAGCTGCAGGTCCAGCATCAATGGGTGCTACACCGCAACCACCTGGGATCCGTCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCCCATAGTATAGCTGAGAGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACTGACAGAGCAGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAGCTCGTGGCTGATGTACCCCTTTCTGCAGTGGAGCAGGGGGAGGACATAGAAGGTGGAGGCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAAGTGGCAAAACTCATGGAAGAAGATGTGGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCAATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCAACAGGCATCAAGCCTGAATCAAATAGCCACTGA 897 0.4816 MAGNSSEGLGDDFLEQILAVPEAPVGYVGRNVVSDVGVLQLGFRPLGLNLEQSGFVRQQQQEDLNSTSSSASSTDMRGLFSAFGQMHSPTLAPSVRPTLPPHPQLHLHQQAFQGQAAAGPASMGATPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGGNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTGIKPESNSH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01566 298 MobiDBLite consensus disorder prediction 111 146 - -
Cca02g01566 298 Pfam Helix-loop-helix DNA-binding domain 147 191 IPR011598 GO:0046983
Cca02g01566 298 Gene3D - 137 199 IPR036638 GO:0046983
Cca02g01566 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Cca02g01566 298 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 285 - -
Cca02g01566 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 201 IPR036638 GO:0046983
Cca02g01566 298 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 285 - -
Cca02g01566 298 SMART finulus 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01566 Cca-Chr2 34355387 34361428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01566 112 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.118 9.07e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01566 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01566 - - vun:114189791 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01083 02 27874175 27879134 Cca02g01566 02 34355387 34361428 ECH
Cca02g01566 02 34355387 34361428 Cca02g01566 02 34355387 34361428 ECH