Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01565 ATGGATAGGGTCTTCTCAGTGGACGAAATCTCCGATCACTTCTGGCCGCCGCCGATCCCCGTCTCCTCCGCCCAAGACTCCTCCAAGATGACCCGCAGCGCTTCCGAGTGGGCCTTCCAGCGCTTCATCCAGGAGGCCACTGCTtccgcctcctctccgccctcttcctcctccGACGTCGTCTTCGTCGAGATCGACGACCAACCCAAACCCCCTCCCAACAACGCCACCCCTTTGCCCAATGCCTCTGCTCCCCTCCCCCTTGACTCCCAGGACTATCAGGCCTTTCTCAAGAGCAAGCTCAATCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTCTGGCCACAGCTCAAGATTCATCCACTCTTCCCAACGGTGGATTACATTCATCTAATCCTTCTCAAGTTGGATCTCAGACTACTTCTAAAGCATCTATTTCTTCTGTAAATGATCCACCTGAGTTACAAGATAAAGATACCAAAGTACCAGCTGGGATTCCTTCTGTACCTACCATTCAAAAGAAACCTGCTGTTGCTGTTAGGCCATCAACAAGTGGATCATCAAGAGAACAATCTGATGACGAGGATATTGAGGGAGAGACATCCATGAATGATAACATGGACCCTGCTGATGCAAAACGAGTCAGGAGGATGCTATCCAATCGGGAGTCAGCCCGGCGCTCAAGAAGAAGAAAGCAAGCCCATTTAACTGATCTGGAAACACAGGTTTCACAATTAAGAGGTGAAAATTCTTCTCTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAATGACTCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAAATGGCTGAAGAAACCGTCAAAAGAATTACTGGGTTGAACCCAATGCTTCATGCAATGTCTGAGATATCATCAATGGGCATGCCATCATTTGATGGACGAAGCCCTTCGGACACTTCAGCTGATGCAGCTGTTCCTGTGCAAGATGACCCACATCATCACTTCTATCAACCAACATCTAGTAACCCTATTCCCAGTCATGATCTGAGAGTGAACAATGGGTTAGGGGGCATTTCTACAATTGAAAATGTGCAGCAGAACGCTGCAGCAGTGGTAGGTGGGAACAAGATGGGTCAAACAGCTTCCCTTCAGCGGGTGGCTAGCTTGGAGCATCTTCAGAAGCGGATTCGTGGTGGTGTGGATCCATCTAATGGGGAGCAGTAA 1242 0.4742 MDRVFSVDEISDHFWPPPIPVSSAQDSSKMTRSASEWAFQRFIQEATASASSPPSSSSDVVFVEIDDQPKPPPNNATPLPNASAPLPLDSQDYQAFLKSKLNLACAAVAMTRGSLATAQDSSTLPNGGLHSSNPSQVGSQTTSKASISSVNDPPELQDKDTKVPAGIPSVPTIQKKPAVAVRPSTSGSSREQSDDEDIEGETSMNDNMDPADAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSSLLKRLTDVSQKYNDSAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMLHAMSEISSMGMPSFDGRSPSDTSADAAVPVQDDPHHHFYQPTSSNPIPSHDLRVNNGLGGISTIENVQQNAAAVVGGNKMGQTASLQRVASLEHLQKRIRGGVDPSNGEQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01565 413 MobiDBLite consensus disorder prediction 46 88 - -
Cca02g01565 413 PANTHER BZIP TRANSCRIPTION FACTOR 1 398 - -
Cca02g01565 413 SUPERFAMILY Leucine zipper domain 214 264 IPR046347 GO:0003700|GO:0006355
Cca02g01565 413 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 212 266 IPR004827 GO:0003700|GO:0006355
Cca02g01565 413 Coils Coil 230 257 - -
Cca02g01565 413 Gene3D - 213 268 - -
Cca02g01565 413 MobiDBLite consensus disorder prediction 316 353 - -
Cca02g01565 413 Pfam bZIP transcription factor 213 264 IPR004827 GO:0003700|GO:0006355
Cca02g01565 413 Coils Coil 272 292 - -
Cca02g01565 413 MobiDBLite consensus disorder prediction 46 62 - -
Cca02g01565 413 MobiDBLite consensus disorder prediction 118 213 - -
Cca02g01565 413 MobiDBLite consensus disorder prediction 220 239 - -
Cca02g01565 413 SMART brlzneu 210 274 IPR004827 GO:0003700|GO:0006355
Cca02g01565 413 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 217 232 IPR004827 GO:0003700|GO:0006355
Cca02g01565 413 MobiDBLite consensus disorder prediction 1 27 - -
Cca02g01565 413 MobiDBLite consensus disorder prediction 118 154 - -
Cca02g01565 413 CDD bZIP_plant_GBF1 215 266 IPR045314 GO:0003700|GO:0006355
Cca02g01565 413 Pfam Basic leucine-zipper C terminal 281 406 IPR020983 -
Cca02g01565 413 PANTHER BASIC LEUCINE ZIPPER 63 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01565 Cca-Chr2 34349552 34353280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01565 1 303 bZIP Transcription Factor Family AT4G02640 41.515 2.93e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca02g01565 bZIP_C 2.3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01565 K25784 - gmx:778135 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01565 02 34349552 34353280 Cca02g01565 02 34349552 34353280 ECH
Cca03g03039 03 51848888 51852102 Cca02g01565 02 34349552 34353280 PCT