Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01557 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGGCACAAGCACGAGAAGAAAAAATACGTGCTGAAGAAGATTCGCCTTGCTCGTCAAACCGAGCGCTCTCGTAGATCTGCACACCAGGAGATGGAACTCATTTCTAAATTAAGAAATCCATTTATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTATTTCTGGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGACTACTTGCACATGAGCCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTCCTAACAAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCCTCCGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCGCATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTAACAAGATTAACAAGTCCATAGTCGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTTCAGAGTTGCTTGGGCACCCTCATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAACCCCAGGCAAAGCACATTGCCAGTTCATTGGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGTTGCCAGAAGATGATCCTGTTTCCATCTATAGGGATAAGCGACATTCTTTCAGCAATGACCGGACACTAAAGCCTAGTGTATCTGGATTTGATCAAGATTCTGTATGCTCCACCCTAGAAATAGATTGTACTCCTGACTATTTGAATCAAAGGTTAGCAGAACTACGTATTGGAGATAGCCATGAAGTGAAGTCAATCCAGAAGCCTGCTGTTTCCAGAACTTCTAGCTTTACTAAGACTCCAAGATTCACTTCCTCAAAAGCCTCCACCACCAACAAGAAATCAGTGGAATCCTCAAAGAATCGCAAGGCGCTTCCTCTTTCGCACAATACCACAAAATCTGCTAATACTAGTCGCAGAGCATCATTTCCACTGCCAGCAAAGGGTGGTGTTCGGCAGCCTCCTTGTAGGCCCAACGTCAGTTTGCTTAGTCACGTATCTTCACCAGATATCTCAGTCAATTCTCCACGAATTGATAAGATAGCTGAATTCCCATTATCTTCATATGAAGATTCTTTGTTTCCCATCAATAGAACATCATCCCGTGCACAAGGTTCCTCAGGCTTCGCATCTCATGGCAACAATTCGACTGTGATAGACAAATGCACGGTAGAGGTATATGATAGAGCCTCTAAGGCTGGTTGTATGGATGCTTGGCAGGGAATCAAGCAGAGCATGTTAAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTGCTTCAAGCCACACCTCTTCTGACTTGCGCCGTCGACAATTTGATCCATCATCATTCCAGCAAAGGGCTGAAGCTTTAGAAGGGTTACTTGAATTCAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTAGGGGTTCTGTTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTTAAAGAGAACACTTTTAACCCGGAAGAATCCCTGTAA 1860 0.4274 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFLEEKLCKWLVQLLMALDYLHMSHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQPYVLKVHLKINNPRQSTLPVHWPESNYMKKTRFLLPEDDPVSIYRDKRHSFSNDRTLKPSVSGFDQDSVCSTLEIDCTPDYLNQRLAELRIGDSHEVKSIQKPAVSRTSSFTKTPRFTSSKASTTNKKSVESSKNRKALPLSHNTTKSANTSRRASFPLPAKGGVRQPPCRPNVSLLSHVSSPDISVNSPRIDKIAEFPLSSYEDSLFPINRTSSRAQGSSGFASHGNNSTVIDKCTVEVYDRASKAGCMDAWQGIKQSMLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01557 619 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Cca02g01557 619 CDD STKc_Nek 3 258 - -
Cca02g01557 619 MobiDBLite consensus disorder prediction 530 545 - -
Cca02g01557 619 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01557 619 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 604 - -
Cca02g01557 619 MobiDBLite consensus disorder prediction 360 414 - -
Cca02g01557 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cca02g01557 619 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01557 619 PANTHER SERINE/THREONINE-KINASE NEK4 1 604 - -
Cca02g01557 619 MobiDBLite consensus disorder prediction 523 554 - -
Cca02g01557 619 MobiDBLite consensus disorder prediction 359 427 - -
Cca02g01557 619 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01557 619 SUPERFAMILY Protein kinase-like (PK-like) 1 302 IPR011009 -
Cca02g01557 619 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Cca02g01557 619 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01557 Cca-Chr2 34246532 34253861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01557 10 259 MAP Kinase Kinase Kinase AT1G53570 32.549 1.11e-37 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca02g01557 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01557 K08857 - gmx:100804898 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01557 02 34246532 34253861 Cca02g01557 02 34246532 34253861 ECH
Cca03g03027 03 51746341 51753345 Cca02g01557 02 34246532 34253861 PCT