Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01556 ATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCACTACCACTTCACTTACCTTTCCCTCTCCATGCTTCAGCCGCCCCCAATACCACCTTCCCCACCAATTTTGATCCTTATAACCCTTCTCACAATTTGCCACTCCAACCCAATCTCTTGCACCCATTACACCATAAAGATCATGAAGAGAAGGAAGAAACTAGCACCGTCCCTATGAACTTCGAAATCCAAAGAGATCAAAGGCAACAACAACAACTACCCGAGCTCGTTGATCCATGGACTAACGACGAAGTGCTCGCACTCTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAGCTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAAGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGTAGATATTTCAACAACATTAATTTCGGCAAGAATAATAACACCACCACCACTACCAACAACAATTATCGGTTTCTTAGTGAGCTTGAACAGCTTTATCAAGGTGGGGGTGGTGATCACCAAGCTGTGACAGAAGAAAAGACTCAGCAACAAGACAAGATGGGCCAGCATGCATCGGAAGAAGGGGATTCGAGAAACGTTGTGGCAAAACAAAACGACGACGCAGTGAAAAAGACAAAGGAGCGAAAGAGGAAGAGGCCTGATAGATTTGAGATATTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCACAGCAAGAGGAGATGCACAACAAGCTTCTCGAGGACATGATGAAGAGAGATGAAGAGAAGTTCACGAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGACATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATTCAAATCTTGAACAAATTCTCAGCCACTTCCCCTGCAAGCCAAACCCTCAAGGTAACCAGTGGTTCAAACCTAAACACATACCTTGCAACACAAAACCCTAATCCTTCACAAAACACCCCAACAGAAAACCCTACCTTGAGTCTTGCACAAGACACATCACAACAAGTTATTCcttcttcttcttctacttctgctCCAGCTCCGCAGAACCCTAGTTCAGGTTCTCTACATAATAATCCACTAGAGACAAATTCGATTATGAATAAAGGCAATGAGAAGGACGATACTGGGAGAAGGTGGCCAAAGGATGAAGTGTTGGCACTGATAAACCTGAGGAGCTCTAGTGTGACCAACAACAATGAGGAGAAGGAAGGGAACAAGGTCCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTGGGATATAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACTAAGGATGTTAATAAGAAGAGGTCCCTTGACTCGAGGACCTGTCCCTACTTTCATCAATTGAGCTGTTTGTATAATCAAGGAAAACTTGTTCTACAATCTGAAAGCCAATTGAATGATAATCCACCTGAGAATCCTGATGAGCAAGTGCCACAAGATCAAACCCAAGCTAATGAGTCTAGTTCTCCTCAAGTGGGGTCTGGTGGTTTCAGTGTGCAGCAGCAGCAGGTTGATCATGGAGGTGAGAAACCCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1710 0.4386 MFDGVPDQFHQFITPRTSLPLHLPFPLHASAAPNTTFPTNFDPYNPSHNLPLQPNLLHPLHHKDHEEKEETSTVPMNFEIQRDQRQQQQLPELVDPWTNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKKSAEKCKEKFEEESRYFNNINFGKNNNTTTTTNNNYRFLSELEQLYQGGGGDHQAVTEEKTQQQDKMGQHASEEGDSRNVVAKQNDDAVKKTKERKRKRPDRFEIFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNKELDMMAREQAIAGDRQANIIQILNKFSATSPASQTLKVTSGSNLNTYLATQNPNPSQNTPTENPTLSLAQDTSQQVIPSSSSTSAPAPQNPSSGSLHNNPLETNSIMNKGNEKDDTGRRWPKDEVLALINLRSSSVTNNNEEKEGNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSCLYNQGKLVLQSESQLNDNPPENPDEQVPQDQTQANESSSPQVGSGGFSVQQQQVDHGGEKPLMQVPSLDFDQF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01556 569 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 556 - -
Cca02g01556 569 ProSiteProfiles Myb-like domain profile. 402 468 IPR001005 -
Cca02g01556 569 Gene3D - 97 153 - -
Cca02g01556 569 Gene3D - 410 473 - -
Cca02g01556 569 MobiDBLite consensus disorder prediction 335 409 - -
Cca02g01556 569 MobiDBLite consensus disorder prediction 508 553 - -
Cca02g01556 569 MobiDBLite consensus disorder prediction 192 231 - -
Cca02g01556 569 Coils Coil 253 273 - -
Cca02g01556 569 CDD GT1 408 475 - -
Cca02g01556 569 SMART sant 93 150 IPR001005 -
Cca02g01556 569 SMART sant 406 470 IPR001005 -
Cca02g01556 569 MobiDBLite consensus disorder prediction 335 397 - -
Cca02g01556 569 MobiDBLite consensus disorder prediction 508 569 - -
Cca02g01556 569 Pfam Myb/SANT-like DNA-binding domain 95 163 IPR044822 -
Cca02g01556 569 Pfam Myb/SANT-like DNA-binding domain 408 494 IPR044822 -
Cca02g01556 569 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Cca02g01556 569 PANTHER - 13 556 - -
Cca02g01556 569 MobiDBLite consensus disorder prediction 182 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01556 Cca-Chr2 34209547 34211942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01556 1 500 Trihelix Transcription Factor Family AT5G28300 41.308 1.02e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca02g01556 Myb_DNA-bind_4 7.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01556 - - ccaj:109795059 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01556 02 34209547 34211942 Cca02g01556 02 34209547 34211942 ECH
Cca03g03026 03 51733723 51736053 Cca02g01556 02 34209547 34211942 PCT