Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01549 ATGCCTCAGTTTCATGATTCTTTTCCTTTTCCATGTTTATTGCAGTACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAGAGACTTTACTGTGAAATTCATCTCCTGAAGACATTGAAGCACAGGAACATTATGAAGTTTTACTCCTCTTGGGTCGATACTGCGAATAGGAATATCAACTTCGTGACTGAAATGTTCACCTCTGGTACACTTAGACAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCGGTGAAGCATTGGTGTAGACAGATCTTGAGTGGACTTCTCTATCTTCATAGTCACGACCCGCCTGTGATCCATAGAGATCTAAAATGTGACAATATTTTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCTGCTCGTTGTGTAGGGACGCCTGAGTTCATGGCCCCAGAAGTATATGAGGAGGCATATAATGAGTTAGTTGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGTACTCATTCGGCTCAAATCTATAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTATATAGAGTGAAGGATCCGGAAGTGAGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTGAGGCTTTCTGCAAGGGAGCTTCTAGATGACCCTTTTCTTCGAATTGAGGATTATGAATATGATTTGAGACCTGTAGACAGTGGGGACTTGGATGAATTTGGTCCTCTCACGAGACAGCCATTCTTTGATCTTCATCGAAGCTATAGTAACTTCAGTAATGATTACTCCAATGGTTTTGGTTATGAAGGAGATTGGTGTCCTCATCCGGCTGAGATTGAACCTAATGGAATTGAACTTTTTGAGTACCATGATGATGAACCATCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTCTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAGCTCGACATTACTGATCAGGATGTTACCAGAATAGCGGATATGATAGACGGGGAAATTGCTTCCTTGGTACCTGAATGGAGACCAGGACCAGGAATTGATGAAACTCCCCGTTTTGCTAATCAAGGTTTCTGTCACAATTGTGTGTCTAATCATACTTCTAGCGGCTCTTTTCTGGATTTTCTTTCACACAATCCAGATAACAAGAACTTGCAACTTCTTGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACCTTCCAATCAGAAGAGTATGACAATCATGCTAGAGGGGATCTGAACATATCAAACCAATTAGAGAGCTTGCAGTATCAAGAGTTATGGAATCAGCACGAAAGTCGCGAACTGAGTCCAGTAGAGTCTGATCAAAGCCATTCTGATGAACAATATGAACAAGTAGACAAATCAATACCAGCTAAGGTTAAAGTACAAGATGTTTGGGAAAATAAGTTTCCCTCCAATGCAGCAAATTCTCCAAGAAACTTATCAGGAAGTCATGATTTCTCTACTATCCGATCTACCTATTGTAACCTTGAGGATGACTATGAGAAAGAGATCCAAAAGGAACTTAGATGGCTCAGAGCCAAGTACCAAATGGAGTTAAGGGAACACAAGGATCGACAGTTTGGACAATCTTCCCAGAGTAATAACAGAGAGCACAAAACAGAAAATGGCTTTTTGTCACCTTCACTGACAGAAACATCAAAAGGAGGCAACAATGCGACTCAGTTGAAACCCATTACTAATAAGTGGAATTGTGATTCCAGTAGCCACCCTCATGTCCATGAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCCAAATTGTGAGGCGTTAGAATCCCCTGGAGAAGGTATGGTTACTGCAAAGAGTTTCTACACAGGTTCATTGCTTCCACACTCTCTGCACAGGACAGTTTCCCTCCCAGTTGATGCTGTTGATATATAA 2184 0.4153 MPQFHDSFPFPCLLQYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAARCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHSAQIYKKVISGKKPDALYRVKDPEVRQFVEKCLATVSLRLSARELLDDPFLRIEDYEYDLRPVDSGDLDEFGPLTRQPFFDLHRSYSNFSNDYSNGFGYEGDWCPHPAEIEPNGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFANQGFCHNCVSNHTSSGSFLDFLSHNPDNKNLQLLECCRHGCASMHGRFEEITFQSEEYDNHARGDLNISNQLESLQYQELWNQHESRELSPVESDQSHSDEQYEQVDKSIPAKVKVQDVWENKFPSNAANSPRNLSGSHDFSTIRSTYCNLEDDYEKEIQKELRWLRAKYQMELREHKDRQFGQSSQSNNREHKTENGFLSPSLTETSKGGNNATQLKPITNKWNCDSSSHPHVHESSPNSDTQRAPNCEALESPGEGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01549 727 Gene3D Phosphorylase Kinase; domain 1 6 95 - -
Cca02g01549 727 MobiDBLite consensus disorder prediction 525 544 - -
Cca02g01549 727 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 364 418 IPR024678 GO:0004674|GO:0005524
Cca02g01549 727 SUPERFAMILY Protein kinase-like (PK-like) 17 272 IPR011009 -
Cca02g01549 727 MobiDBLite consensus disorder prediction 617 687 - -
Cca02g01549 727 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01549 727 Gene3D Transferase(Phosphotransferase) domain 1 97 276 - -
Cca02g01549 727 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 716 - -
Cca02g01549 727 Gene3D - 361 426 - -
Cca02g01549 727 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01549 727 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 15 716 - -
Cca02g01549 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Cca02g01549 727 CDD STKc_WNK 14 271 - -
Cca02g01549 727 MobiDBLite consensus disorder prediction 622 687 - -
Cca02g01549 727 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01549 Cca-Chr2 34112298 34116499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01549 117 726 MAP Kinase Kinase Kinase AT3G04910 52.607 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca02g01549 Pkinase 8.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01549 K08867 - gmx:100775959 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01549 02 34112298 34116499 Cca02g01549 02 34112298 34116499 ECH
Cca03g03020 03 51660602 51663615 Cca02g01549 02 34112298 34116499 PCT