Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01548 ATGGCGGACAAGGCAGTCACAATCAGAACCAGAAAGTTTATGACTAATAGGCTTCTCTCTAGGAAGCAATTCGTTGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGGCTGAACTGAAGGAGAAACTGGCAAGAATGTATGAGGTGAAGGACCCTAACACTGTATTTGTCTTCAAGTTCAGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGCTTGATTTATGATACAGTTGACAACGCAAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGACTTGATACCAAAGTAGAGAAGTCGAGGAAGCAAATGAAGGAGAGAAAGAACAGAGCTAAGAAGATTCGTGGTGTAAAGAAGACCAAGGCTTCCGATGCTGAAATATATGAAATGTTACTTGTTTTGGGGAGTGACTATCTGTTGGAATGTGGAGGGTCTTCTGGCATGAACTCGTAA 468 0.4295 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAEIYEMLLVLGSDYLLECGGSSGMNS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01548 155 Gene3D - 1 131 - -
Cca02g01548 155 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Cca02g01548 155 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 - -
Cca02g01548 155 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Cca02g01548 155 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Cca02g01548 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cca02g01548 155 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01548 Cca-Chr2 34102315 34104277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01548 1 131 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.786 1.78e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01548 K02974 - gmx:100802918 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01548 02 34102315 34104277 Cca02g01548 02 34102315 34104277 ECH
Cca03g03018 03 51647305 51649546 Cca02g01548 02 34102315 34104277 PCT