Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01546 ATGCATAACTGCCATAAACGAAGAAACGGCTACCTTGATACTCTAATATGCGCAAAAAGGAACTCTGCTTTCTCCTCAACAATTATGCTTTCCTCCTTCGTTTCTTGGATCTTGTCACCCCCCTCTTCCTCCTCCTCTTCCGAACAAGAACAAAATCTAGTTGATAATGATGACGACAATAACAATGATATTAACCACCAAAGGTTCAATGTGCAAGATGATGAAAACGACCATTTTCTAACTTCATACGACGTGGATGACACCATTCCCATTGCTCTTGCCGTTCCCAATGCCTCCCCCGCCGTCACGGTCGCCTTCCCGGCCGAGGATGACAGAAACACAGCTGCAGCCACCGCCAGCGCCACCACTATAGTAACACGGGCCAAAGGACAGCGGACTGCCAAGTATTCCGGCATGGTGAGACAATATCATAGGCTGTGGACAAAGCAGGATGAGATGGAGCTCTTGAAGGGATATCTTGATTACCTCAAGCAACATGGGGGGGCAACCACTTCTCTCCAAAACGACGTAGCCTCGTTGTATGATCACGTTAGGCCAAAACTGAACGTGGATTTCAACAGGCACCAGCTTGTTGAGAAGCTGCGAAGGTTAAAGAGAAAACACAAGTTGGCTTTGGACAAAGGTAGGGACAAGGAGGTTTCCTTTAGGAACCCCCAGGATCAGGCCATTTTCGAAATTTCGCACAAGATTTGGGGCAATGATGCAGATAATATAATGGACCATGATTGTTTGGATGGTTATGAGTCAGGACGCACTCCTGAAAGTCATCATCATGTTGGCAATGATGATGTCAAGGTGGTGAGGATTGAACAAGTTGACAACAGTGATGAAATGGACAATAGAGTGGCAAAGCGGTTGCGGCTTGATGCAGATTATGTGGACAGAACAAATGAGCAGAATCATGGTGATACTGCTACTGCCATTCAGGGCTTCGTTGAGGAGACAATGAGGTCCTGTTTCCCACCATTGCTGAATGAAGTGTTGGATGAAGCACAGGAAGGGCCACTTCCTGAGCTAGCACCAAACCCAATGCCGTTGTGCCTGGAGGAAGTGGACCATGAGCAATGGAGGAAACGGAGGATTTTGGAGCTGGAGGTGTATTTGAAGCGGTTGGAGTTGTTGCAGGATAAGATCAAGGCAAAATTGGAGGAGTTGCGATCTAGCTGA 1188 0.4731 MHNCHKRRNGYLDTLICAKRNSAFSSTIMLSSFVSWILSPPSSSSSSEQEQNLVDNDDDNNNDINHQRFNVQDDENDHFLTSYDVDDTIPIALAVPNASPAVTVAFPAEDDRNTAAATASATTIVTRAKGQRTAKYSGMVRQYHRLWTKQDEMELLKGYLDYLKQHGGATTSLQNDVASLYDHVRPKLNVDFNRHQLVEKLRRLKRKHKLALDKGRDKEVSFRNPQDQAIFEISHKIWGNDADNIMDHDCLDGYESGRTPESHHHVGNDDVKVVRIEQVDNSDEMDNRVAKRLRLDADYVDRTNEQNHGDTATAIQGFVEETMRSCFPPLLNEVLDEAQEGPLPELAPNPMPLCLEEVDHEQWRKRRILELEVYLKRLELLQDKIKAKLEELRSS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01546 395 Coils Coil 371 395 - -
Cca02g01546 395 Coils Coil 194 214 - -
Cca02g01546 395 PANTHER TRANSCRIPTION FACTOR GEBP FAMILY-RELATED 29 395 - -
Cca02g01546 395 Pfam Protein of unknown function, DUF573 144 239 IPR007592 GO:0006355
Cca02g01546 395 MobiDBLite consensus disorder prediction 41 71 - -
Cca02g01546 395 PANTHER BNAANNG10740D PROTEIN-RELATED 29 395 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01546 Cca-Chr2 34089190 34090596 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01546 92 394 GeBP Transcription Factor Family AT5G28040 31.608 3.95e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Cca02g01546 DUF573 2e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01546 - - gmx:102662842 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03017 03 51642897 51645281 Cca02g01546 02 34089190 34090596 PCT