Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01534 ATGAGTGAGAGAGTGAAGAAGGAAAAGCAAACGGAGAAAAAGGAGAGGATGAAAAACATCTTCAAGAAGCTTCACATAGGTGGCAACCACGATCCTCATCGATCCAACGAGGTTTCGCCGCCTGTGCCCTCGCCGTCATGCGCCGCCGACCACTCTCCGAGCTCTTCCTCCGCCGCTCCGCCGAGTCCTTCGACTTCGTCGCCGTCTACCGCGGTGGTCACTCCcggaggaggcggcggcggcggcggcgCCAGCCCGGTGGTGAATCGGCAGGACTATTTCTCGTCGGAGGAGGAGTTTCAGGTACAGCTAGCCCTAGCTATTAGCGCCTCCAATTCGGAGTTCCGCGACGATCCTGAGAAGGATCAGATCCACGCGGCGACGCTGTTGAGTTTGGGAGGCCACCGAATCGATTCGACGAGGAACAGGGATGACGTGGCGGAGGCGCTGTCCAGGCAGTACTGGGAATATAATGTGCTTGACTATGAAGAGAAGGTGGTAGATGGTTTTTATGATGTATATGGGCAATATAATGATTCGGTAATGCAAGGAAAGATGCCATCTCGAACAGATCTTGAAGCAAACCCTGGAGGCTCTGAGGTGGTCATTGCTAATCGAACAATTGATCCTGCTTTGGAAGAATTGATACAAATTGCACAATGTATTGCATTAGACTGCCCTGTCGCTATTTTAGTACAAAGGCTTGCTGAACTTGTTACAAATCATATGGGTGGTCCTGTAAGGGATGCTAATATTATGTTAGCCAAATGGACAGAAACAAGAGCAGAGTTAAGGACATCACTTCACACAATTGTATTGCCTCTTGGATCCTTAAATATTGGGCTTTCTAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAATATGCCTTGTAGACTTGTAAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGGTGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCAGGGACACTTATCCCAGCTGATATTTTAAGCACCAAGGATAGTGCCCTTAAGTGCAATCCCAAGATTTTTCCAAGTTTACCTTCCACTGATGATACTGAATTTTCTTACTCAAAACCTATCCAACCATCTCATGGTGAAGGTAGTAGTCAAAATTCTGTGATAAAAGATCATTCACCGCCCTGGAATGGAAAATCATATTTTGAGAATTCAGAGCCTTCAAACTTAGGTTTGAGCAGAGACACTGGTGTTGGTCCTTCTAAAATTCCTAATAGAGGGACTCCTAACCAACTAGAAAATTCGCCAGCCTTGTCTGGTACTTCTCTGTACAAAGGGACTCTTGGAATGAATACAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTACCATATACTCATAATAACAGCCCCAACGACTCTCGGAACCTTTTTGCAGATCTTAATCCATTCCAAATAATAGGAATGGGGAAGGCCTCTGTGCATAACAAACCTGTGGAAAATAAGCTTCCTGAGCTTAAAAGTGCTAAAACCAATACTGTTTCTGGTCGACCCCCAGTGCCATTGATGTGGAAGAATCGTCATGCTTACAATCAAGACCCCAGGAAAACTAGTCATAACCCTAATGAGTACAACCCTCCCTTATTTGTTTCCAATGGTTCATCTACATCTGAAAATATTGACCTTAGTAGTTCCAAACCATTGTATAATTCAAATATAAATAATGATGTAAATGCTCGAATTTTGGCGCAAGTTACTGGTTCAGTTTCACCACCTTCAGTACCTGAATTGAACAGGGCTGAGGATCTCAATGCTGATTTTAACCAGGGGGATTTGGATAATTCTCAAAATATCATGGTAGAGGCAGTTAAAGAGCCAGGAAATTCTGAAATCCGGCATCATGACTGGAGGAAGGGCACAAATGACAGATTCATGGGAAACAATTTGAAATTAAAAGATCCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGGTTGATCAAATATTGGATGATGTAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTCTTGGTGAAAGAATTGGAATAGGTTCATATGGCGAGGTATACCAGGCTGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGACTTTTCAGGCGCTGCATTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTTCGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACCCGTCCTCCCAATCTCTCAATCATTTCAGAGTATCTACCAAGAGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCTGATCGATGAGAAACGAAGAATAAAAATGGCTCAGGATGTGGCTAGGGGCATGAATTGCTTACACACCAGCTCACCTACAATTGTTCACCGCGATTTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTAAAGGTGTGTGATTTTGGGTTGTCACGCTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGGTGAGAACTTGA 2562 0.4309 MSERVKKEKQTEKKERMKNIFKKLHIGGNHDPHRSNEVSPPVPSPSCAADHSPSSSSAAPPSPSTSSPSTAVVTPGGGGGGGGASPVVNRQDYFSSEEEFQVQLALAISASNSEFRDDPEKDQIHAATLLSLGGHRIDSTRNRDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGQYNDSVMQGKMPSRTDLEANPGGSEVVIANRTIDPALEELIQIAQCIALDCPVAILVQRLAELVTNHMGGPVRDANIMLAKWTETRAELRTSLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLVKGSHYTGVEDDAVNIIKLEGEREFLVDLMAAPGTLIPADILSTKDSALKCNPKIFPSLPSTDDTEFSYSKPIQPSHGEGSSQNSVIKDHSPPWNGKSYFENSEPSNLGLSRDTGVGPSKIPNRGTPNQLENSPALSGTSLYKGTLGMNTVGDGTRLNVNVVPYTHNNSPNDSRNLFADLNPFQIIGMGKASVHNKPVENKLPELKSAKTNTVSGRPPVPLMWKNRHAYNQDPRKTSHNPNEYNPPLFVSNGSSTSENIDLSSSKPLYNSNINNDVNARILAQVTGSVSPPSVPELNRAEDLNADFNQGDLDNSQNIMVEAVKEPGNSEIRHHDWRKGTNDRFMGNNLKLKDPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLVLGERIGIGSYGEVYQADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRILHRPNCLIDEKRRIKMAQDVARGMNCLHTSSPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTVRT 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01534 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Cca02g01534 853 MobiDBLite consensus disorder prediction 1 32 - -
Cca02g01534 853 CDD STKc_MAP3K-like 695 852 - -
Cca02g01534 853 ProSitePatterns Protein kinases ATP-binding region signature. 695 717 IPR017441 GO:0005524
Cca02g01534 853 SMART serkin_6 689 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01534 853 MobiDBLite consensus disorder prediction 48 73 - -
Cca02g01534 853 Gene3D Transferase(Phosphotransferase) domain 1 767 853 - -
Cca02g01534 853 Gene3D Phosphorylase Kinase; domain 1 682 766 - -
Cca02g01534 853 MobiDBLite consensus disorder prediction 424 441 - -
Cca02g01534 853 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 84 850 - -
Cca02g01534 853 SUPERFAMILY Protein kinase-like (PK-like) 679 850 IPR011009 -
Cca02g01534 853 ProSiteProfiles Protein kinase domain profile. 689 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01534 853 MobiDBLite consensus disorder prediction 1 89 - -
Cca02g01534 853 Pfam Protein tyrosine and serine/threonine kinase 690 840 IPR001245 GO:0004672|GO:0006468
Cca02g01534 853 PANTHER SERINE-THREONINE PROTEIN KINASE 84 850 - -
Cca02g01534 853 MobiDBLite consensus disorder prediction 365 416 - -
Cca02g01534 853 Pfam Ethylene-responsive protein kinase Le-CTR1 147 340 - -
Cca02g01534 853 MobiDBLite consensus disorder prediction 365 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01534 Cca-Chr2 33915961 33924612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01534 17 850 MAP Kinase Kinase Kinase AT1G08720 52.448 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca02g01534 EDR1 3.6e-74 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01534 - - gmx:100818780 1459.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01534 02 33915961 33924612 Cca02g01534 02 33915961 33924612 ECH
Cca02g01534 02 33915961 33924612 Cca03g02274 03 43658333 43660229 PCT