LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca02g01530	ATGGGGTGTGTGATTAGCAGAGAAGTGTCATCCGGAATAATCTCTGAGGGGAAGGAGGAGAAGAATTTGAGTGGTGAGTCCAACAAGGTTGATGAAGTGTCCACAAGCAGAGCTGAGGGGAACGAGGTAGAGGCTCAGAAGGGTGAGAAGGAAAAGGAAGAGAATGGTGGTGATGACGGGGTTCGGCAGCCGAAGGGCGAAAGAAGAAGATCAAAGCCAAATCCAAGGCTAAGTAATCCACCAAAGCATTTGCAAGGAGAGCAAGTAGCAGCTGGATGGCCACCTTGGCTAACAGCAGTGTGTGGGGAGGCACTTAATGGGTGGATTCCACGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGAAGATTGGATCACCCCAATGTTATTAAGCTAGAAGGTTTAGTTACATCGAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAATTCACAGAGCCTCAGGTTAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGAGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAAATTGCTGACTTTGGACTTGCATCTTTTTTTGATCCAAACCACAGGCATCCCATGACTAATCGGGTGGTTACCCTTTGGTACCGCCCTCTTGAGTTGCTTCTTGGTGCCATAGAATATGGTGTTGGTGTGGACCTGTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCAGGGAAACCTATTTTGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCCAAGATGCCTAATGCTACCTTGTTTAAACCTCGAGAACCATACAAGAGATGCATAAGAGAGACATTCAAAGATTTTCCACCTTCTGCTCTGCCCCTCATCGACACTCTTCTTGCAATTGATCCGGCAGAGCGGATGAGTGCCTCAGATGCTCTAATAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGATGACGAAGCAAGGAGATCAAGAGCTGCGGGCAAAACTCATGTTGATGGTGCAAGGAAGAACCGAACACGTGATCGTGCTGTAAAACCTGTTCCTGCTGCGGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCACCACATGAAGATGGACAGCTTGGATTTCCTTTGGGATCTTCCAACCATATTGATCCAGATATTGTTCCTCCTGACGTCTCTTTGGGTTCAACCTCATACACATTTTCAAAGGATCCATTCCAAGCTTGGTCAGGTCCCATTGGTAATCCTGCTACCATTGGTGTCACAAAGCGAAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAAGGTGCCCTCAAGGATAAGGTTAAAGGAAAGAAAATCATAGCTTAG	1737	0.4393	MGCVISREVSSGIISEGKEEKNLSGESNKVDEVSTSRAEGNEVEAQKGEKEKEENGGDDGVRQPKGERRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHSRNVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHRHPMTNRVVTLWYRPLELLLGAIEYGVGVDLWSVGCILGELLAGKPILPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLAIDPAERMSASDALISEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRSRAAGKTHVDGARKNRTRDRAVKPVPAAEANAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPPDVSLGSTSYTFSKDPFQAWSGPIGNPATIGVTKRKKHTAGDALDLSKPYKGALKDKVKGKKIIA	578

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca02g01530	578	Pfam	Protein kinase domain	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca02g01530	578	SMART	serkin_6	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca02g01530	578	Gene3D	Transferase(Phosphotransferase) domain 1	199	440	-	-
Cca02g01530	578	SUPERFAMILY	Protein kinase-like (PK-like)	110	406	IPR011009	-
Cca02g01530	578	PANTHER	CELL DIVISION PROTEIN KINASE	45	555	-	-
Cca02g01530	578	MobiDBLite	consensus disorder prediction	1	88	-	-
Cca02g01530	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	236	248	IPR008271	GO:0004672\|GO:0006468
Cca02g01530	578	ProSitePatterns	Protein kinases ATP-binding region signature.	122	145	IPR017441	GO:0005524
Cca02g01530	578	PANTHER	OS01G0367700 PROTEIN	45	555	-	-
Cca02g01530	578	MobiDBLite	consensus disorder prediction	13	74	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca02g01530	Cca-Chr2	33865229	33870629	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca02g01530	108	438	Core Cell Cycle Gene Families	AT5G10270	53.314	5.48e-122	367

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Cca02g01530		Pkinase	3.6e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca02g01530	K08819		-	gmx:100817289	1042.34

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Cca03g03000	03	51454363	51459744	Cca02g01530	02	33865229	33870629	ECH
Cca02g01530	02	33865229	33870629	Cca02g01530	02	33865229	33870629	ECH
Cca03g03000	03	51454363	51459744	Cca02g01530	02	33865229	33870629	PCT

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