Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01530 ATGGGGTGTGTGATTAGCAGAGAAGTGTCATCCGGAATAATCTCTGAGGGGAAGGAGGAGAAGAATTTGAGTGGTGAGTCCAACAAGGTTGATGAAGTGTCCACAAGCAGAGCTGAGGGGAACGAGGTAGAGGCTCAGAAGGGTGAGAAGGAAAAGGAAGAGAATGGTGGTGATGACGGGGTTCGGCAGCCGAAGGGCGAAAGAAGAAGATCAAAGCCAAATCCAAGGCTAAGTAATCCACCAAAGCATTTGCAAGGAGAGCAAGTAGCAGCTGGATGGCCACCTTGGCTAACAGCAGTGTGTGGGGAGGCACTTAATGGGTGGATTCCACGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGAAGATTGGATCACCCCAATGTTATTAAGCTAGAAGGTTTAGTTACATCGAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAATTCACAGAGCCTCAGGTTAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGAGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAAATTGCTGACTTTGGACTTGCATCTTTTTTTGATCCAAACCACAGGCATCCCATGACTAATCGGGTGGTTACCCTTTGGTACCGCCCTCTTGAGTTGCTTCTTGGTGCCATAGAATATGGTGTTGGTGTGGACCTGTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCAGGGAAACCTATTTTGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCCAAGATGCCTAATGCTACCTTGTTTAAACCTCGAGAACCATACAAGAGATGCATAAGAGAGACATTCAAAGATTTTCCACCTTCTGCTCTGCCCCTCATCGACACTCTTCTTGCAATTGATCCGGCAGAGCGGATGAGTGCCTCAGATGCTCTAATAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGATGACGAAGCAAGGAGATCAAGAGCTGCGGGCAAAACTCATGTTGATGGTGCAAGGAAGAACCGAACACGTGATCGTGCTGTAAAACCTGTTCCTGCTGCGGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCACCACATGAAGATGGACAGCTTGGATTTCCTTTGGGATCTTCCAACCATATTGATCCAGATATTGTTCCTCCTGACGTCTCTTTGGGTTCAACCTCATACACATTTTCAAAGGATCCATTCCAAGCTTGGTCAGGTCCCATTGGTAATCCTGCTACCATTGGTGTCACAAAGCGAAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAAGGTGCCCTCAAGGATAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1737 0.4393 MGCVISREVSSGIISEGKEEKNLSGESNKVDEVSTSRAEGNEVEAQKGEKEKEENGGDDGVRQPKGERRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHSRNVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHRHPMTNRVVTLWYRPLELLLGAIEYGVGVDLWSVGCILGELLAGKPILPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLAIDPAERMSASDALISEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRSRAAGKTHVDGARKNRTRDRAVKPVPAAEANAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPPDVSLGSTSYTFSKDPFQAWSGPIGNPATIGVTKRKKHTAGDALDLSKPYKGALKDKVKGKKIIA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01530 578 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01530 578 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01530 578 Gene3D Transferase(Phosphotransferase) domain 1 199 440 - -
Cca02g01530 578 SUPERFAMILY Protein kinase-like (PK-like) 110 406 IPR011009 -
Cca02g01530 578 PANTHER CELL DIVISION PROTEIN KINASE 45 555 - -
Cca02g01530 578 MobiDBLite consensus disorder prediction 1 88 - -
Cca02g01530 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Cca02g01530 578 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Cca02g01530 578 PANTHER OS01G0367700 PROTEIN 45 555 - -
Cca02g01530 578 MobiDBLite consensus disorder prediction 13 74 - -
Cca02g01530 578 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01530 578 CDD STKc_CDK9_like 116 400 - -
Cca02g01530 578 MobiDBLite consensus disorder prediction 418 455 - -
Cca02g01530 578 MobiDBLite consensus disorder prediction 408 473 - -
Cca02g01530 578 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01530 Cca-Chr2 33865229 33870629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01530 108 438 Core Cell Cycle Gene Families AT5G10270 53.314 5.48e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca02g01530 Pkinase 3.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01530 K08819 - gmx:100817289 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03000 03 51454363 51459744 Cca02g01530 02 33865229 33870629 ECH
Cca02g01530 02 33865229 33870629 Cca02g01530 02 33865229 33870629 ECH
Cca03g03000 03 51454363 51459744 Cca02g01530 02 33865229 33870629 PCT