Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01529 ATGGCTTTTGAAATCGGTTCTGTTGTTACAAAATTGCAAATGTTATCCACCTCAGACCATGCCTCGATTGTCTCCATGAACTTATTTGTGGCACTTCTTTGTGCTTGTATTGTCCTTGGCCATCTTCTTGAGGAGAACCGGTGGATGAATGAGTCTATCACTGCCCTTTTGATTGGTGTTTGCACTGGCGTAGTCATTTTGCTTTTTAGTGGTGGTAAAAGCTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCGCCTATAATATTCAATGCCGGGTTCCAGGTGAAAAAGAAACAGTTTTTTGTTAACTTCATGACCATCATGTTGTTTGGTGCTATCGGTACATTAATATCTTGTACCATCATAACTTTGGGTGCCACACAAATTTTTAAGAAGTTGGATGTTGGTCCACTGGAATTGGGGGATTACCTAGCAATTGGTGCAATATTTGCTGCGACAGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCATATTGACCCATCAATTGCTTTGCAGTTTTTGGGCAATTTCTTATATCTATTTATCACAAGCACAATGCTTGGAGTGTTGACAGGTCTACTCAGTGCTTACATTATTAAAAAGCTGTACATTGGCAGGCATTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTCTCCTACATGCTTGCTGAATTATGCTATCTGAGTGGAATTCTCACTGTATTCTTTTGTGGGATTGTTATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGCATTCCTTTGCAACCTTGTCATTTGTTGCGGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAAAAATGGAAATTCGTCAGTGATAGCCCTGGAACATCTGTAGCAACAAGTGCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCTTTTGTTTTCCCCTTATCCTTCTTATCCAACTTAGCTAAAAAATCATCAAGTGAGAAAATCTCCTTCAGGCAACAAGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCATATAATCAGTTCACCATGTCGGGGCATACTTCGCTGCGATGCAATGCAATCATGATCACTAGCACAATCACTATTGTGCTTGTCAGTACAGTGGTGTTTGGTTTGATGACTAAGCCACTCATAAGGCTTTTACTGCCGCATAGTCCTCATAAAAGCATCATCGCAATTACAGATTCATCTACTCCAAAATCAGTCACTGTCCCACTGATTGCCCAAGATTCTGAAGCCGATCTTGATGGTCATGAAATTAATCGCCCGAGCAGCATTCGTGCTTTGCTTGCCACTCCCACACACACTGTTCATCGATTGTGGCGTAAGTTCGATGATGCATTCATGCGTCCTGTTTTTGGTGGAAGAGGTTTTGTTCCTGTAGAACCCGGCTCACCAACTGAACGTAATGGTCATCAATGGCGTTGA 1620 0.416 MAFEIGSVVTKLQMLSTSDHASIVSMNLFVALLCACIVLGHLLEENRWMNESITALLIGVCTGVVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCTIITLGATQIFKKLDVGPLELGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNHIDPSIALQFLGNFLYLFITSTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSVATSAVLLGLILLGRAAFVFPLSFLSNLAKKSSSEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTSLRCNAIMITSTITIVLVSTVVFGLMTKPLIRLLLPHSPHKSIIAITDSSTPKSVTVPLIAQDSEADLDGHEINRPSSIRALLATPTHTVHRLWRKFDDAFMRPVFGGRGFVPVEPGSPTERNGHQWR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01529 539 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca02g01529 539 PANTHER SODIUM/HYDROGEN EXCHANGER 7 538 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cca02g01529 539 Gene3D - 146 197 - -
Cca02g01529 539 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca02g01529 539 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca02g01529 539 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca02g01529 539 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca02g01529 539 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01529 Cca-Chr2 33847019 33851880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01529 6 537 Antiporters AT3G05030 77.509 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01529 - - gmx:100816746 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01529 02 33847019 33851880 Cca02g01529 02 33847019 33851880 ECH
Cca03g02996 03 51413796 51418862 Cca02g01529 02 33847019 33851880 PCT