Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01523 ATGGAGTGCAACAAGGACGAGGCTGTGAGGGCTAGGCAAATTGCGGAAGCTAGAATGCAAAGAGGCGAATTCGTGGAGGCGATCAGGTTTGCTGCCAAGGCCAAGAAACTGTATTCTGAGGTTGAAAACATTACCCAGATTCTTACCATTTGTGAGGTTCATATTGCTGCACAGAAGAAAGTCTCTGCCTCTGACATGGACTGGTATGCAATTCTTCAGATTGAAAGGTTGGCTGATGAAGCAACCATAAAGAAACAATACAGGAGGCTTGCACTGCTACTTCATCCTGATAAGAATAAGTTTGCTGGTGCAGAAGCCGCTTTCAAGTTGATTGGTCAAGCCAATGGGGTGTTGAGTGACCAAGCAAAACGTTCTTTCTATGACAGGAATTTCGAAGCCTCTGTAAGAGGTGCTACGCCTAAGTCTTCATGTCGTTACTCAAATGGGAATGTGTCTGCTGCAAAACATGATGCAAATGCAACAAATTGTCAGAAGACATTTGATTCACAGCGTTACTCAAATGTGAATGTGTTTGCTGCTAATCATGATGCAAATGCAGCAAATTATCAGAAGAATTCTAATTTGAACTCCACCAGTTTCAGCAACCAAGTTGGACAAAAGACATTTTGGACATCTTGCCAACATTGCAATACCAAGTACCAGTACTGCGTACTTGTTGTAAATGCAACCTTACGCTGTCAACAGTGTTTGAAGATATTTAAAGCTCATGTTATTCAATTTTCATACCAGGGTGTTTCCCCGGCATTTTTTACTTCGGTAAATAACCCGAAAGAGGCTACAATGCATGGTCCCCCAAAATCCGCCTCAGAAAGTACTGGTGGAAATTCTGTATCTATGAAAAAATGTGCTGCTGGAACTGGTGATCATTGTGAAGATCGAAAGAGTAAAGATGGCTATGTTCCTCCATCCAGAGGCACGGAGTCGCAAACCTCTAAAAATGTTGGGAGAAAAAGAGTAAGACAGTCAGCACCAGATTCAAAAGACAGCTTCAATGGTAGAAATGGTGCTGAGATGAAAAATGCCAATGTTGGAGGAAATGACGTTGATTCTTCAAGACTCAATGCAAGGAGATCTTCCAGGAAAAAGCAGAATGTTTCTTATGTGGAAACTTCTGAAGATGATGATATTTCTTATGTGGAGAATTCTGAAGATGATGATATCTCTTATGTGGAAACTTCTGAAGATGGTGATTCTGAAATTCTTTCCAAAAAGCCACGACAAAATGGACCACTTAACACCGATGAAGATGAGAAAGAGAACATGCCTGAAAGTGGTGGATCGTCTAATAACAATAATCCAGGTACTTCAGCTGCTGGTGTGACTGATCAGATGAGTGAGAACGTACCCGAGTCAGATATTGGTCTTGGAACGTCAGAAGAGGATAATTGCTCTCCATTGAATTCAAATGCTCCTTCTGCTCCAAAGGTTGTTGTTTGTCCTGATACAGATTTCAATGATTTTGAGAAGGGCAAGGAGGAGGATTGTTTTGCTGTTAATCAGTTGTGGGCAATTTATGATGACTTTGATGGTATGCCAAGATTTTATGCTCTTGTCAAGAAAGCGGCCTTCCCTTTCAAGTTGCGGATTACTTGGTTGGAACCTGATCCAGATGACCAAGGTGAGACTGATTGGCATGATGCAAAGTTGCCTATTGCTTGCGGTAAGTTCAGACTTGGTAGGTCTCAGAATACTACGGATCGTTTTGTGTTCTCTCATCAGATACGGTGCATAAAAGGCCGGGGCAAAGGTTCTTATCTGGTGTGTCCTAATAAAGGAGAAATTTGGGCAATTTTTAGAAATTGGGATATCAAATGGAGTTCTAACCCAAAGGAACATTCTGAGTATGACTTAGAATATGTGGAAATCCTGTCAGATTTTGTTGAAAATGTTGGCATCGCTGTTGCTTATCTAGGCAAAGTGAAAGGATTTGTTAGCCTCTTTCAGAAAATTGCGAAGAATGGAGTGAACATGTTTTATGTTCTACCTAATGAGCTATATAGGTTCTCACATCGAATTCCTTCGTATAAGATGACTGGTAATGAAAGGGAGGGTGTTCCGATAGGATCTTTTGAACTTGATCCTGCTGCCCTGCCTTTTCAGTTTTAA 2127 0.4123 MECNKDEAVRARQIAEARMQRGEFVEAIRFAAKAKKLYSEVENITQILTICEVHIAAQKKVSASDMDWYAILQIERLADEATIKKQYRRLALLLHPDKNKFAGAEAAFKLIGQANGVLSDQAKRSFYDRNFEASVRGATPKSSCRYSNGNVSAAKHDANATNCQKTFDSQRYSNVNVFAANHDANAANYQKNSNLNSTSFSNQVGQKTFWTSCQHCNTKYQYCVLVVNATLRCQQCLKIFKAHVIQFSYQGVSPAFFTSVNNPKEATMHGPPKSASESTGGNSVSMKKCAAGTGDHCEDRKSKDGYVPPSRGTESQTSKNVGRKRVRQSAPDSKDSFNGRNGAEMKNANVGGNDVDSSRLNARRSSRKKQNVSYVETSEDDDISYVENSEDDDISYVETSEDGDSEILSKKPRQNGPLNTDEDEKENMPESGGSSNNNNPGTSAAGVTDQMSENVPESDIGLGTSEEDNCSPLNSNAPSAPKVVVCPDTDFNDFEKGKEEDCFAVNQLWAIYDDFDGMPRFYALVKKAAFPFKLRITWLEPDPDDQGETDWHDAKLPIACGKFRLGRSQNTTDRFVFSHQIRCIKGRGKGSYLVCPNKGEIWAIFRNWDIKWSSNPKEHSEYDLEYVEILSDFVENVGIAVAYLGKVKGFVSLFQKIAKNGVNMFYVLPNELYRFSHRIPSYKMTGNEREGVPIGSFELDPAALPFQF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01523 708 SUPERFAMILY Chaperone J-domain 61 134 IPR036869 -
Cca02g01523 708 MobiDBLite consensus disorder prediction 430 478 - -
Cca02g01523 708 Pfam DnaJ domain 67 128 IPR001623 -
Cca02g01523 708 SMART dnaj_3 66 123 IPR001623 -
Cca02g01523 708 Gene3D DnaJ domain 53 150 IPR036869 -
Cca02g01523 708 MobiDBLite consensus disorder prediction 263 479 - -
Cca02g01523 708 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 391 706 - -
Cca02g01523 708 Pfam Domain of unknown function (DUF3444) 482 688 IPR024593 -
Cca02g01523 708 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cca02g01523 708 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cca02g01523 708 PRINTS DnaJ domain signature 123 142 IPR001623 -
Cca02g01523 708 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cca02g01523 708 CDD DnaJ 67 120 IPR001623 -
Cca02g01523 708 MobiDBLite consensus disorder prediction 292 307 - -
Cca02g01523 708 MobiDBLite consensus disorder prediction 380 400 - -
Cca02g01523 708 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 383 - -
Cca02g01523 708 MobiDBLite consensus disorder prediction 272 286 - -
Cca02g01523 708 PANTHER - 1 383 - -
Cca02g01523 708 PANTHER - 391 706 - -
Cca02g01523 708 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01523 Cca-Chr2 33804859 33807814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01523 47 245 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 31.841 7.42e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01523 - - ccaj:109790324 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01523 02 33804859 33807814 Cca02g01523 02 33804859 33807814 ECH