Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01516 ATGAATCACCAACCAAGTTTTTGTTTATGGGATCACAAGAAAAGCCAAGCTAATAAATCGAAAAAGCATTCAAATGCCGAATCGTTTAATCTTAAACACAATAGACGAACGTCTATATTTTCTTCCTCACCTTCCGCACATGACTTGAGGCATTTGGAATTGGAGAAAGAAAAAGAAAACGAGGGATCACCAAGGGGAGTCTTAGAAGCATGTATGAAAGAATATGATTCTCATCCTTCACCTGATCATTCCGAAACCACTTGTTCAAGCACCGGGGCACACTCTCACTGGACCAAATTTTTCAGAACTTTGAAGAAAAAATCTTTCAAGCGCCTAGGGTCCCTCTCTCCTCTTACTGTGCCAAGGATACCAAAGTGGAAAAGCAAAAGCAGTAGAGAAAACCAAGTTCTAAGTACGCTCTACGACTTCAAGTCTTCTTTGGTGACTTTCAGCCTCTCTGAACTCACACATGCAACCAACAATTTTAGCAGTGAAAATATAATTGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGGTGTCTCCAAGATGGGCATATAATAGCTGTGAAGAGATTGACTAGAGGGACAACAGATGAAAAAACAGTAGGCTTTCTATCTGAGCTAGGTGTGATTGCTCATGTTGACCATCCTAATACTGCCAAGCTAATTGGATGTTGTGTAGAAGGAGAAATGCAGCTTGTCTTTGAACTATCTCAACTGGGAAGTTTAGGAACTCTTCTTCATGGTTCAGATAAACACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAGTAGCTGATGGTCTTTTCTATCTCCATGAGAATTGCCACAGGCGAATCATTCATAGAGATATTAAGGCAGAGAATATTCTGCTAACGGAGAATTTTGAGCCACAGATTTGTGATTTTGGACTTGCTAAATGGTTACCAGAACAATGGACTCACCATAATGTATCAAAATTTGAAGGCACATTTGGCTATTTTGCTCCTGAATATTTCATGCATGGCATAGTAGATGAGAAAACTGATGTATATTCATTTGGGGTCCTACTTTTGGAGATCTTAACTGGGCGTCCAGCTGTGAATCATTTGCAGCAGAGTGTTGTGCTATGGGCAAAACCTTTGCTTGACACTAACAACATCAAAGACCTTGTTGATCCTTCCCTTGGAGATAATTATGACAGAGGACATTTAGGATGTGTAGTTGTAACTGCATCACTGTGTATTGAGCAGTCTCCTATACTACGCCCCCGCATGAGTCAGGTTGTGACACTGCTAAGAGGTGATGGCCGTGTTCTGGAATGTACAAGAGCAAACCGAAGACCTCTCCAAAGAACTTACTCAGAAGAGTTACTGGACGCACAAGAATACAACTCAACAAAGCATCTAAGAGAACTCAAGCGACATCAGCAAGTTGCATTGGCTCTTGAGCCTTAA 1443 0.4082 MNHQPSFCLWDHKKSQANKSKKHSNAESFNLKHNRRTSIFSSSPSAHDLRHLELEKEKENEGSPRGVLEACMKEYDSHPSPDHSETTCSSTGAHSHWTKFFRTLKKKSFKRLGSLSPLTVPRIPKWKSKSSRENQVLSTLYDFKSSLVTFSLSELTHATNNFSSENIIGRGGFSEVYKGCLQDGHIIAVKRLTRGTTDEKTVGFLSELGVIAHVDHPNTAKLIGCCVEGEMQLVFELSQLGSLGTLLHGSDKHKLDWSKRYKIALGVADGLFYLHENCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEILTGRPAVNHLQQSVVLWAKPLLDTNNIKDLVDPSLGDNYDRGHLGCVVVTASLCIEQSPILRPRMSQVVTLLRGDGRVLECTRANRRPLQRTYSEELLDAQEYNSTKHLRELKRHQQVALALEP 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01516 480 SMART serkin_6 162 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01516 480 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Cca02g01516 480 ProSiteProfiles Protein kinase domain profile. 162 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01516 480 SUPERFAMILY Protein kinase-like (PK-like) 142 428 IPR011009 -
Cca02g01516 480 MobiDBLite consensus disorder prediction 1 48 - -
Cca02g01516 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Cca02g01516 480 PANTHER OS08G0249100 PROTEIN 39 473 - -
Cca02g01516 480 MobiDBLite consensus disorder prediction 31 45 - -
Cca02g01516 480 Gene3D Phosphorylase Kinase; domain 1 123 236 - -
Cca02g01516 480 Pfam Protein tyrosine and serine/threonine kinase 165 372 IPR001245 GO:0004672|GO:0006468
Cca02g01516 480 Gene3D Transferase(Phosphotransferase) domain 1 239 442 - -
Cca02g01516 480 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 39 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01516 Cca-Chr2 33751042 33754372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01516 142 434 Receptor kinase-like Gene Family AT1G53420 46.230 3.47e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca02g01516 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01516 - - gmx:100781529 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02980 03 51250573 51254441 Cca02g01516 02 33751042 33754372 ECH
Cca02g01175 02 29298369 29302130 Cca02g01516 02 33751042 33754372 ECH
Cca03g02071 03 40975849 40979703 Cca02g01516 02 33751042 33754372 ECH
Cca08g02184 08 55093125 55096703 Cca02g01516 02 33751042 33754372 ECH
Cca02g01516 02 33751042 33754372 Cca02g01516 02 33751042 33754372 ECH
Cca03g02980 03 51250573 51254441 Cca02g01516 02 33751042 33754372 PCT