Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01507 ATGTGTTTGCCCgagggagaaagagagagagagagagCCATGGCACTAGAAGCAGTGGTATTTTCACAGTCACAAGACCCCTTTGGTGGTTACGGATCATCAGTGAAGGACTTTTACAACTGCACCTTGTTGGCTTCACCCAACTGGGGGGACTATGAACCACACATCAACACagaagaagaagaagaacaagGTTCTATTATCTCTACTTTTCTCGataatagtaataataacaataataataataataataaCAACCCTTATGGAGATTGGACCACTAGCTCCTCCTCATCAATGCTACCCCACTTGAATGATCCTCAAGAAACCACTGACCCCAACAACAGCCATAACTTAGATACCTTAACTACAACTATTACTCGCCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAGGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAACGAGTATCTTTCTGTTCTTCGATCTCTAATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTTGAGCAGAGGCTGCATTTTCTTGGTGCTAAGAAAGAAGGAGAGGGGAAATCTGATGGTGGTGGTGCAAATGGAAACATGCCCTTTTCCGAGTTCTTCACCTTTCCACAGTATTCAACAAGTGGCGGTGGCACCGATAATTCTGCAGCCAAAGGTGAGGACGTGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTTACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGGTCCAAAAAACGCCCAAAGCAGCTCTTGAAGTTGGTATCTGGTTTGCATACCATGCGCCTCACAATCTTGCACCTAAATGTTACCACAACTGGTGAAGTTGTTCTCTACTCTCTTAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTTGATGATATAGCTGCAGCTGTGTACCAGATGCTGGATAGGATTCAACAAGAGGCAATGCTGAATTAA 1038 0.4133 MCLPEGERERERAMALEAVVFSQSQDPFGGYGSSVKDFYNCTLLASPNWGDYEPHINTEEEEEQGSIISTFLDNSNNNNNNNNNNNPYGDWTTSSSSSMLPHLNDPQETTDPNNSHNLDTLTTTITRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAKKEGEGKSDGGGANGNMPFSEFFTFPQYSTSGGGTDNSAAKGEDVGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01507 345 MobiDBLite consensus disorder prediction 63 124 - -
Cca02g01507 345 Pfam Helix-loop-helix DNA-binding domain 145 196 IPR011598 GO:0046983
Cca02g01507 345 CDD bHLH_AtFAMA_like 147 216 - -
Cca02g01507 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 207 IPR036638 GO:0046983
Cca02g01507 345 SMART finulus 150 201 IPR011598 GO:0046983
Cca02g01507 345 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 345 - -
Cca02g01507 345 Gene3D - 133 209 IPR036638 GO:0046983
Cca02g01507 345 MobiDBLite consensus disorder prediction 59 140 - -
Cca02g01507 345 PANTHER MAX DIMERIZATION, MAD 14 345 - -
Cca02g01507 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01507 Cca-Chr2 33659778 33661735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01507 14 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.095 6.90e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01507 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01507 - - pvu:PHAVU_007G181900g 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01507 02 33659778 33661735 Cca02g01507 02 33659778 33661735 ECH
Cca03g02965 03 51061544 51063385 Cca02g01507 02 33659778 33661735 PCT